Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00341 ATGAGGTCTCGGCGCTTCGCTTCCACTGGATCCGTCGCCGACCTTACTGTCATTGCCGTCTTGGTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAGGTCATCTGGAGCATGATGGGAAGCCAAACAACCGAACAGGGTGACTGCTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACTGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTTCTGCAGGAACAAGTAACAAAACTGTCAAACTCCCTAAAAACTTCACGCTTAAAGCACCAGGACCTGGATATACTTGTGGGCCAGCAAAGATTGTGAGGCCAACCAAATTTGTTTCTGGAGACAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAACGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCTACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAATAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCCTTTTTGGCTTCAGTTGTATCAGCTCCTGATAAATCGGGCAACAATCCACCCTTGGTCCAGTGTACCAGCCACATGTGCCCTATTCGTGTCCATTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGAGTGAAGATCACAATCACAAATTTCAATTACCGAATGAACTACACTCTCTGGAATCTGGTGGTGCAGCATCCCAATTTTGATAATATCACTAAATTATTCAGCTTTAACTATAAGTCGTTGAGCCCATATGGTGACCTAAATGATACCGCGATGTTATGGGGAGTTAAGTTCTACAACGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTTCTATTTCAAAAAGACCAGAACACTTTCACTTTCGACAAGGGTTGGGCTTTCCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCTTACTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTACTTGTGACCATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 44.15 MRSRRFASTGSVADLTVIAVLVLFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGSQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGSAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVRPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPFLASVVSAPDKSGNNPPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPAISLLVTILISLALLLNFAQ* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2130722 2134358 - CsaV3_1G003410.1 Csa01g00341 514838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00341 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
Csa01g00341 455 PIRSF COBRA 9 455 IPR006918 GO:0010215|GO:0031225
Csa01g00341 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Csa01g00341 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00341 Csa-Chr1:2130722 Csa04g01018 Csa-Chr4:7964202 0 dispersed
Csa01g00340 Csa-Chr1:2128397 Csa01g00341 Csa-Chr1:2130722 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00341 - - csv:101213424 934.48