Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00342 ATGCCGCCATTACCGTATCTGCAACTTCGAACCTTAGTTCTTCGATCTCTATCATCGTCTTCTACTAATTCCTTGAAAGATTCTGCTAGGACGGTTCTTTTACATCGAAATTTGACGTCTCTCTTCCACCATTTCCGACATCATGGGGCGGCGTTAAGGTTTTCTTCTCCCTTGTATCTCTCACTTTCTCATTCGTTCTCTTCCGAGTCCGTCAACAATCACGTGGATCAAACATCCCAATCACTTGCATCTGAGCTTCTCAAAGACCCTGATTCGGATCCTCTTCCCATTACACAGCGTCTTCAACTTAGCTTTTCGCATGTTAAACCGAATCCGGAGTTGGTTCGTAACACACTCAATCTCTCATCGGAAGCTGGCCGTACAGTGTTAGGGTTTAATGAATGGTTAGTATCGAATCCTGATTTTCATCACACTGATGAAACTATATCGTATTTTGTTGATTTCTTTGGTCGTAGAAAAGATTTCAATGCGGTTCAGGAAGTCCTTGCGAAAGGTTTAGGGATCAATGGGCCTAAAACCCTGAAGTCGTCTATTCATCGGTTCGCTCGTGCTGGGCGACCCACTAAGTTGATCTCATTTTTTGAGACGATGGAGACGAATTACGGGCTTAAGAGGGATAAAGAGTCGCTTAGGATGGTAGTGGAGAAGCTTTGTGAAAATGGGTTCGGGAGCCATGCTGAAAAGATGGTCAAAGACTTGGCTAATGAATTTTTCCCTGATGAAGCAATATGCGATACTCTGATCAAAGGATGGTGTGTGAATGAGAAACTTGATGAAGCTAAAAGGCTAGCGGGTGAGATGTACAGGGGCGGGTTCGAGTTAGGGACAACCGCATATAATGCTTTGCTTGATTGTGTTTGCAAACTTTGTAGGAAAAAGGATCCGTTTAGACTTGATTCTGAAGCTGAGGAAATTCTGGTGGAAATGGATTGTCGTGGGGTTCCACGAAATGTCGAAACTTTCAATGTGCTGATCAATAATTTGTGCAAGATTAGGAGAACTACTGATGCAGTTAATTTGTTTCATCGAATGGGGGAATGGGGATGTCATCCCAATGCTGAAACGTTCCTCATATTGATTAGAAGTTTGTATCAAGCGGCACGAACGGGGGAGGGGGATGAAATGATTGACAGGATGAAGTCTGTCGGATATGGAGATGCACTTGATAAGAAGGCTTATTATGAGTTTATGAATATTTTGTGTGGGATTGAGAGAATTGATCATGCACTGGTTGTATTTGCAAAGATGAAGAAGGATGGGTGTGAACCTGGGATTAAAACATATGATCTATTGATGGGAAAACTTTGTGCCCACAATCGTTTGGACAAAGCGAATTCACTCTTTAACGAAGCTCAAAAACGGGGTGTACCAGTTACTCCAAAAGCATATCAGGTGGATCCGAAATATGTAAAGAAGCCAAAGGATAAGAAGGTTGCAAAGAAGAGGGAGACATTGCCAGAGAAAATGGCGAGAAAGAGGCGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAACCGAGAAGAGGAATGCGTAGAGCATTTTGA 1569 42.77 MPPLPYLQLRTLVLRSLSSSSTNSLKDSARTVLLHRNLTSLFHHFRHHGAALRFSSPLYLSLSHSFSSESVNNHVDQTSQSLASELLKDPDSDPLPITQRLQLSFSHVKPNPELVRNTLNLSSEAGRTVLGFNEWLVSNPDFHHTDETISYFVDFFGRRKDFNAVQEVLAKGLGINGPKTLKSSIHRFARAGRPTKLISFFETMETNYGLKRDKESLRMVVEKLCENGFGSHAEKMVKDLANEFFPDEAICDTLIKGWCVNEKLDEAKRLAGEMYRGGFELGTTAYNALLDCVCKLCRKKDPFRLDSEAEEILVEMDCRGVPRNVETFNVLINNLCKIRRTTDAVNLFHRMGEWGCHPNAETFLILIRSLYQAARTGEGDEMIDRMKSVGYGDALDKKAYYEFMNILCGIERIDHALVVFAKMKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKDKKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2137123 2140067 - CsaV3_1G003420.1 Csa01g00342 514839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00342 522 Pfam PPR repeat family 403 443 IPR002885 -
Csa01g00342 522 Pfam PPR repeat family 324 370 IPR002885 -
Csa01g00342 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Csa01g00342 522 Gene3D Tetratricopeptide repeat domain 145 299 IPR011990 GO:0005515
Csa01g00342 522 Gene3D Tetratricopeptide repeat domain 393 513 IPR011990 GO:0005515
Csa01g00342 522 Gene3D Tetratricopeptide repeat domain 300 392 IPR011990 GO:0005515
Csa01g00342 522 TIGRFAM PPR: pentatricopeptide repeat domain 401 431 IPR002885 -
Csa01g00342 522 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Csa01g00342 522 TIGRFAM PPR: pentatricopeptide repeat domain 434 465 IPR002885 -
Csa01g00342 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Csa01g00342 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Csa01g00342 522 PANTHER ATPASE EXPRESSION PROTEIN 3 42 521 - -
Csa01g00342 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Csa01g00342 522 Pfam PPR repeat 253 278 IPR002885 -
Csa01g00342 522 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL 42 521 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00342 - - - csv:101213658 1002.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00253 Csa-Chr1:1580944 Csa01g00342 Csa-Chr1:2137123 4.01E-42 dispersed
Csa01g00342 Csa-Chr1:2137123 Csa02g02464 Csa-Chr2:21690631 5.23E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009519 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00342 Csa_Chr01 FPKM 27.14151 32.584 32.348637 33.450008 26.014662 21.843996 28.223709 20.384508 24.192612 22.42746