Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00349 ATGGACTCGGACGAAGAAGATTTCGTTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAGGAAATCTGTGGCTGACGCTTCGGGTACCATGCGAACCCTCCCTCACTGGAAACAAGAGGTTAGAGATGAGGAAGGACGCAGAAGATTTCATGGGGCATTCACTGGAGGATTTTCTGCTGGTCATTACAATACAGTGGGCTCGAAAGAAGGTTGGACTCCACAGTCATTTACATCATCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTAAACTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGCCGAGGCCTGGGGACATCTGCTCAGTTTGATACATTTGGGTTCACAGCTGTAGAGCTTGCTCGTAAACAAGCCGACAAGGAGCAACAACAGAGGCCGTCTGCTATTCCTGGACCTGTTCCTGATGAATTAATTGTTCCAGCTGCAGAATCTATAGGTGTGAAGCTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCACGGGCTAATTCCCGTTATGATGCTCGAAGAGATGCACGAAAAGCATTTCTAGCATTTTCAACTGGTGATGTCAAATCAGAAATCCCCAATTCTGAACCGTTTCAGGAGGATGATGATATTGTTTCTCCTCAACTGGCCAAGGGTGATGTTTCATCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCACGGTTTAGGTTTTGATCCTTACAAGCATGCACCAGAGTTTATGGAAAAGAAAAGAGCGCGCACAGCTGGGAATCAGGAAGGTTACAAAAAAGTTTTCTCCACGAAGAATAATCTTTTTGGCTTTAGGACTGAGAGGATTGCTTCTGGCTTTGGCATTGGTGCGCTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCAGGTTATGAGTTCGAGGAAACATATGTACAAGAAGAGGATGAGCCTCCTTCTAAGATGATCACAGATGGCAAACAAAAGTTGATTGGAAGAAAAGTTGAGGGTGTCTTGCTTGGATTTAGAATTGCTTCGAAATCTGACTACCAGATGGAAAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCCCACCACAAATTTGCAGGGCCTCTCATCGGTGGCTATAAGCTTGCTGACACTCCTCCTGTTGAGGTTCCCCCTCCTGAGGATAATAATCTGAAACTTTTAATTGAAGGGGTGGCAACTTTGGTTGCTCGCTGCGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAATGGAGGAACTGGCCAGGAATATTATTCAAGGAAGCTATGGGAGGAGCAACTGAAGCGTGTGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCGAGCCTGAAGAAGATGACAGCCGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGCGCTAAAGAGTTAAATCCACCTGCAGCTTCTGACGGTGTGCATGTCCAATACAATCTTTCAGATACATTTACTAAACCTACATCATCGGGTGGGATGCCAGAGATTGTCAAACCTTTCAAGGACGATTCAGCTAAGCAAGAAAGATTTGAGCAGTTTTTAAAGGAAAAATATCAAGGAGGCCTGCGCACTGGTGCTCCTGTTGGAGCTATTAATATGTCAGAAGCAGCTCGTGCACGTGAACGCTTGGACTTTGAGGCTGCTGCAGAGGCTATTGAGAAAGGGAAAGGGTTGAAAGAAACTAAGCTCTCTGCTGAGCACTTTGTGGATTTTTTAGCCACTGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGTCAAAGATACAAAGCTAGAAGGTTTAATGATGGAGAAAATGATCCCAAAACGAGAAGAATATCAGTGGCGCCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCCACCACCAGCACCTAGAATGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAATCAACAAAGGTTGAAGAATCTTTAACCTCAACCCCTTCTTCATTTCCTCAATCAAATGCTGAAGAAAAAGACATGGATGCATCTGAAAATGTGAATGAAAAAGTAGAAGTTGAGTGTGTTGATCGGCCTGTTGATCTATATAAGGCTATTTTCTCTGATGAATCGGAAGATGAAGAGAGCACATCAACTCTCAAGCAAACCGAGGATTCTAAAAAGAAAGTTGAAGTAGCTAATACAACACTTAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCCCCAGATCTACCTCCATCAAAGAAAGGCCAAACCACAGCTCCTCAGAATGAAGCTGTACCTGTTGGTGAACAGAATATCAATATCCTTTCAGTTGAAGATAAGCCTTATCCCACTCCATCGTCCACTGGGATTCTATCGGACCATCGAATGACAGGCACTGCGGGACATGATCTAAATAGCAGAAAAGAAGACAATGAACTCATTCATAACTCAGCTGGAAGTGGTGGTAAAGTTATGGAATCCAGCTCTTCCAAGAAAACTTCAGGTAAAGTTTATGAAGAAAAGATGTACAAGGACAAGGGGGATAGGAAGGCTAACAACAGGCGAGTTGACATTCATCGTGATTGTAGCGGCAGCTCATCATCGGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGCAGATATAAAAGTAGTGACTCAGAGGATAGTGCATCAAGTGATGATTATCATACGAAAGAGCACTCTAAATCACGAGAAAGAAAAAAAGGATCTTCTGAAGAAAAGAAAAGCCGAAGAAAACACTCAAAACATCACAAGCACAGACATAGAGATTCTTCCCCCAGAGACCGTCATCGCTCGGGAAAAGATCGTATAGTATCTGAAAGAGAACATAGATGGAGAGATTGA 3006 43.11 MDSDEEDFVFYGTPIEREEEINSRKRKSVADASGTMRTLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSAQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGVKLLLKMGWRHGRAIKDSRANSRYDARRDARKAFLAFSTGDVKSEIPNSEPFQEDDDIVSPQLAKGDVSSSQSTPVYVINPKQDLHGLGFDPYKHAPEFMEKKRARTAGNQEGYKKVFSTKNNLFGFRTERIASGFGIGALEELDVEDEDVYTSGYEFEETYVQEEDEPPSKMITDGKQKLIGRKVEGVLLGFRIASKSDYQMERFDPPVIPKDFIPHHKFAGPLIGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLNGGTGQEYYSRKLWEEQLKRVDQPKPQFDDKLSPSLKKMTAESRGKILGEKPLARSAKELNPPAASDGVHVQYNLSDTFTKPTSSGGMPEIVKPFKDDSAKQERFEQFLKEKYQGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKETKLSAEHFVDFLATGGMQFTSGGVEEVKDTKLEGLMMEKMIPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRMRSKLDTLIFTSNSVKSTKVEESLTSTPSSFPQSNAEEKDMDASENVNEKVEVECVDRPVDLYKAIFSDESEDEESTSTLKQTEDSKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTTAPQNEAVPVGEQNINILSVEDKPYPTPSSTGILSDHRMTGTAGHDLNSRKEDNELIHNSAGSGGKVMESSSSKKTSGKVYEEKMYKDKGDRKANNRRVDIHRDCSGSSSSEDEKRRKRSRRRRYKSSDSEDSASSDDYHTKEHSKSRERKKGSSEEKKSRRKHSKHHKHRHRDSSPRDRHRSGKDRIVSEREHRWRD* 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2172649 2184142 - CsaV3_1G003490.1 Csa01g00349 514846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00349 1001 MobiDBLite consensus disorder prediction 788 1001 - -
Csa01g00349 1001 PANTHER BNACNNG56020D PROTEIN 1 803 - -
Csa01g00349 1001 SUPERFAMILY Surp module (SWAP domain) 393 463 IPR035967 GO:0003723|GO:0006396
Csa01g00349 1001 MobiDBLite consensus disorder prediction 67 87 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 879 919 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 982 1001 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 71 87 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 694 711 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 694 721 - -
Csa01g00349 1001 Pfam Protein of unknown function (DUF1604) 39 118 IPR011666 GO:0006397
Csa01g00349 1001 MobiDBLite consensus disorder prediction 800 815 - -
Csa01g00349 1001 Pfam Surp module 413 460 IPR000061 GO:0003723|GO:0006396
Csa01g00349 1001 SMART surpneu2 411 463 IPR000061 GO:0003723|GO:0006396
Csa01g00349 1001 MobiDBLite consensus disorder prediction 928 959 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 846 860 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 826 840 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 741 762 - -
Csa01g00349 1001 MobiDBLite consensus disorder prediction 960 981 - -
Csa01g00349 1001 Gene3D Surp module 392 465 IPR035967 GO:0003723|GO:0006396
Csa01g00349 1001 ProSiteProfiles SURP motif repeat profile. 413 457 IPR000061 GO:0003723|GO:0006396
Csa01g00349 1001 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 803 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00349 K13123 GPATCH1; G patch domain-containing protein 1 - csv:101222702 1843.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00846 Csa-Chr5:6358126 Csa01g00349 Csa-Chr1:2172649 4.50E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00349 Csa_Chr01 FPKM 0.118146 0.242592 0.0 0.114983 0.196271 0.310461 0.0 0.498027 0.519499 0.638958
Csa01g00349 Csa_Chr00 FPKM 0.289509 0.389392 0.172763 0.251869 0.834381 0.513024 0.914781 1.47409 1.467395 1.634082
Csa01g00349 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.473099 0.0 0.678908 0.675272 1.002968
Csa01g00349 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Csa01g00349 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0