Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00351 ATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGAAACTTCTGCAGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 483 43.89 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMKLLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2186973 2190630 + CsaV3_1G003510.1 Csa01g00351 514848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00351 160 MobiDBLite consensus disorder prediction 122 160 - -
Csa01g00351 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Csa01g00351 160 PANTHER PROTEIN DR1 HOMOLOG 1 159 IPR044255 -
Csa01g00351 160 MobiDBLite consensus disorder prediction 144 160 - -
Csa01g00351 160 Gene3D Histone, subunit A 4 150 IPR009072 GO:0046982
Csa01g00351 160 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00351 Csa-Chr1:2186973 Csa03g00426 Csa-Chr3:3617539 1.55E-16 dispersed
Csa01g00351 Csa-Chr1:2186973 Csa05g00631 Csa-Chr5:4179690 1.61E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30632 PF00808 CBFD_NFYB_HMF 2.90E-22 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00351 K21751 - csv:101214627 301.982