Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00353 ATGCCTGTTTCGACTCGGTCTCAGATCATGAATGACGGACAGATTGATTCAATTCCAGGTCAAGAAGACAAACAGCAAACGAATCTTCCACCTAGAAATCTTCACCATGGATTGAAAGAGAAGATGAAGGCACTAACCCTTTTGTACGAGCAGCAGAAGCTGGCTTCAGCAGCTCTTAAGAGACCATCATTAAAAGAGGAAGATCTAAGATTCACGACGCATCCGAGTGTTGAGCTGAATGGTTCTTGTAAGAAAGAGGAGAAAGAGCCGAAGCTTGAGAATGTAATGAAAGAAAATGCAATGCCTAATTCAACTGTTACAAGAACTTATGTTCTTCCCCAACCGCCGATGGCTGATGCAAAGGAGAATGTGGTGGTTGGAAGTGATAGGATCGTTGGGTTCTCGTGCTCGAAAAAGGCGAGTTTGTCAACAAATGTGGCGAGGAAATTGTCATTAGGGAACTCAATGCCTGTGGTGGAAATGAAGGAGAATGTGGGGTGTAAGAAGTTGCAAGAAATGGAGGAATTGGGGAGTTGCTCAGAGAAGGAGAGTTTGGGGGAAAGTCGGATTTTGGTGTTTGTGAGGCTGAGGCCGATGGCCAAGAAGGAAAAGGAAGCTGGATCTAGGAGTTGTGTTAAAATAGTGAATAGAAGAGATCTCTATTTGACAGAGTTTGCTAATGAGAATGATTATTTGAGACTGAAGCGGCTCCGTGGACGCCATTTTACATTCGACGCCTCATTTCCTGATACCACTAATCAGCAAGAAGTTTATTCCACCACGACAGCAGAGCTTGTAGAAGCAGTTCTGCAGGGAAGGAATGGTTCTGTCTTCTGCTATGGAGCCACTGGGGCTGGAAAGACCTACACAATGCTAGGAACGGTTGAGAACCCTGGAGTAATGGTTTTGGCTATCAAAGATCTCTTCACCAAGATTAGGCAGAGGAGCTGCGATGGGAACCATACAGTCCACCTCTCTTACATCGAGGTCTACAATGAAACAGTCAGAGATTTGTTGTCCCCAGGAAGGCCATTAGTCCTCAGAGAAGACAAGCAGGGCATTGTTGCGGCTGGTCTTACGCAATACAGAGCTTACTCCACGGATGAAGTGATGGCCTTGCTTCAGCGAGGAAATCAAAACCGAACGACTGAACCGACCCGTGTTAATGAAACTTCTTCACGTTCCCATGCTATACTGCAGGTTACAGTTGAGTATCGAGCCAGAGATGGTGCAACGAACGTCGTAAACAGAGTAGGGAAGCTATCATTGATTGACCTTGCTGGGTCAGAGAGAGCACTTGCCACAGATCAGAGAACGTTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTTGCTCTAAGTAGTTGCATCAATGCTCTTGTGGAAGGAAAGAAGCACATTCCTTACAGGAATTCAAAACTTACGCAACTTCTGAAGGACTCGTTAGGAGGAGCTTGTAACACTGTGATGATTGCAAATATCAGCCCAAGCAACCTATCATTTGGTGAAACCCAAAATACACTTCACTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTGCAGAAGCAAATGAGGAAATAATTAAGGCACCTGAATCTGAATCGGACCAGGCGAAACTACTGCTTGAATTGCAGAAAGAAAATCGTGAACTGCGTGTGCAGTTGGCTCGCCAGCAACAGAAGTTACTTACATTACAGGCACAATCCCTGGCTGCAGTTGGGTCTCCAACCCCATCTTCAGCCACATCTCTTCTAACTCCTCCAACGTCTGTTTACCAAAATGAGAAACGGAAACCGAGATCATCCTTCTTGAATGGGAACTGTTTCACACCAGAATCTAGAAGGAAGGGAGCAGAGGAAGGAGTTAGAGAGCTTCGACGCACGGTGAAACAATTAGAAGCCGAGCTTGAGAAGACAAAGAAAGAGCACGTTGTGCAGTTGAAGCAAAAAGATGATATTATCGGTGAGCTTTTGAAGAAAAGTGAAAAAACAGCAGGATTGGTGAGAGGAGAAGGAGCAAAGAGGGCAGAAACAAGAACCAGCTTAAGACCAAAGGAGCCGAGCATTGGTGAACTGAAGAGCCCGAGCCACCGTTTCAAATCACCAGCTCCAACAGCTAAAAAACGAAGCTTTTGGGACATAACAACAACTAATAGCCCATCTGTTGCCACATTAAATGGAAGGAAGACCAGAAGTCATGTACTTGCAGAGCCTCCTACTGCTGCTCCCTCTATGCTTCGTCAGCCGGGCTTTGCTCGACAGAAGCCATAG 2280 45.61 MPVSTRSQIMNDGQIDSIPGQEDKQQTNLPPRNLHHGLKEKMKALTLLYEQQKLASAALKRPSLKEEDLRFTTHPSVELNGSCKKEEKEPKLENVMKENAMPNSTVTRTYVLPQPPMADAKENVVVGSDRIVGFSCSKKASLSTNVARKLSLGNSMPVVEMKENVGCKKLQEMEELGSCSEKESLGESRILVFVRLRPMAKKEKEAGSRSCVKIVNRRDLYLTEFANENDYLRLKRLRGRHFTFDASFPDTTNQQEVYSTTTAELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHTVHLSYIEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRARDGATNVVNRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSNLSFGETQNTLHWADRAKEIRTKVAEANEEIIKAPESESDQAKLLLELQKENRELRVQLARQQQKLLTLQAQSLAAVGSPTPSSATSLLTPPTSVYQNEKRKPRSSFLNGNCFTPESRRKGAEEGVRELRRTVKQLEAELEKTKKEHVVQLKQKDDIIGELLKKSEKTAGLVRGEGAKRAETRTSLRPKEPSIGELKSPSHRFKSPAPTAKKRSFWDITTTNSPSVATLNGRKTRSHVLAEPPTAAPSMLRQPGFARQKP* 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2194805 2199676 - CsaV3_1G003530.1 Csa01g00353 514850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00353 759 Gene3D Kinesin motor domain 180 525 IPR036961 -
Csa01g00353 759 PANTHER CENTROMERE PROTEIN E 162 758 - -
Csa01g00353 759 Coils Coil 618 652 - -
Csa01g00353 759 MobiDBLite consensus disorder prediction 576 612 - -
Csa01g00353 759 Coils Coil 544 571 - -
Csa01g00353 759 SMART kinesin_4 187 527 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 MobiDBLite consensus disorder prediction 671 696 - -
Csa01g00353 759 MobiDBLite consensus disorder prediction 1 33 - -
Csa01g00353 759 PANTHER KINESIN-LIKE PROTEIN 162 758 - -
Csa01g00353 759 Pfam Kinesin motor domain 195 519 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 MobiDBLite consensus disorder prediction 1 32 - -
Csa01g00353 759 ProSitePatterns Kinesin motor domain signature. 419 430 IPR019821 GO:0003777|GO:0005524|GO:0007018
Csa01g00353 759 ProSiteProfiles Kinesin motor domain profile. 189 519 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 MobiDBLite consensus disorder prediction 671 759 - -
Csa01g00353 759 MobiDBLite consensus disorder prediction 713 731 - -
Csa01g00353 759 PRINTS Kinesin heavy chain signature 272 293 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 PRINTS Kinesin heavy chain signature 386 403 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 PRINTS Kinesin heavy chain signature 420 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 PRINTS Kinesin heavy chain signature 469 490 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa01g00353 759 MobiDBLite consensus disorder prediction 576 625 - -
Csa01g00353 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 564 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00353 K10401 KIF18_19; kinesin family member 18/19 - csv:101222937 1467.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00353 Csa-Chr1:2194805 Csa06g03075 Csa-Chr6:26392024 4.43E-84 dispersed
Csa07g02239 Csa-Chr7:20993363 Csa01g00353 Csa-Chr1:2194805 9.15E-56 dispersed
Csa01g00353 Csa-Chr1:2194805 Csa04g01460 Csa-Chr4:14448096 4.27E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00353 Csa_Chr01 FPKM 17.75296 20.057379 15.145928 15.101827 18.999428 20.424442 19.353163 16.103256 14.500416 16.899384