Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00355 ATGGATGCTCGCCGTGGCTCCCGCGTCGTCAACCCCAAAATCCGTCAGGTCGGATTCTTCACTCTCGACCCTCCCAATCCCCCCGGCCGTTCCCTCTCCGGTCCCGCCGATTGCACCCCTTCTCAACAGTCCCTCTCTCCTCCCTCCAATTCACTGTCTCCCGTCATGATTCCCCCTCCCCGTCATCTCTCTGATAACCTCGCTTCTCGCTCTGCCGTTTTTCCTCTTCCACCTCCCGCCAATTGGAGGGATTCCGCCGATCATATTCATGTTGGCAGCTATAACCCCTCCGAAATGCTTCTTGCTACTTCTCCTTCTGGTAGAATTGGGGATGAAGAGTTGGATATGTCAGAGGATTCTTTCACCTCCGTTCCGTATCGCCGGAGTGGTTCTGGGAAGATTGCCTCGAGCTTTCCTGGCGTTGGAATCTACATGGCGGCTAAGGCGTCGGAGACTTCACAGGCGATGGTTCCTAACACGGTGGAAGCTAATAAGTCTGTTGGGGTTGCAGAAAAGAATGGGGGGGCTTCCACAGAGTTACAGAATCGACAGCCACCATCAAATTCAAAACCCCAAAAGGCAAAAACCACGAAGGCTGAAAGACGTGCTCTACAGGAAGCACAACGAGCTGCAAAAGGTGAAGCAAAGAAGTCAAGTAACGCTCCTGGTAAAGCTGTGAAGCAGTCCTCGACTATGAGAGATAGCACTGCTGCACCTTCGGTGGCATCTACTGACAAAAGAGGAGGTGATCGCACACATGATAAAGAAAGGAAGAAAGATGCTCCACCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAAGGAACTCAGCTTCCTGATCTCGTGTCAAAGTTTTTCCAACTTGATCCCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTGCGATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAAAAGTCTCTGGGTAGAGATTTAACCACAAAAATTGGTGGCTATGTATCATTCTTCAACGAATGCAGGCCACTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAATCTCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCGATCGCTTCATTAATGAAAAGATTATAATTGCAGACGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGGGATGTTCTTCTCACATATGGATCATCGTGTGCTGTAGAGATGCTCCTATTATATGCTCACGAGCTTGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTTCGTAGGCTCATAGGGAGGGGCCTAAGTTGTACATACACTCATATAAATGCTATTTCTTACATGATGCACAAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCGGTTGCCATGGTTGCTAACGCATTCCATGTTCCAGTGTTAATCTGCTGCGAAGCCTATAAATTCCACGAAAGGGTTCAGCTTGATTCAATATGTTTCAATGAATTAGGCGATCCAGATGCTATCTCAAAGGTTCCAGGAAGGAAGGATATTAATCATCTAGAAAATTTGGCTGCTAAAGAACAACTGCAACTTCTAAATTTAATGTACGACGCCACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGATCCCGCCTACAAGCGTGCCGGTGATCGTGCGTGAGTATCGGAGAGAGCACCTTTGGATATAA 1938 46.18 MDARRGSRVVNPKIRQVGFFTLDPPNPPGRSLSGPADCTPSQQSLSPPSNSLSPVMIPPPRHLSDNLASRSAVFPLPPPANWRDSADHIHVGSYNPSEMLLATSPSGRIGDEELDMSEDSFTSVPYRRSGSGKIASSFPGVGIYMAAKASETSQAMVPNTVEANKSVGVAEKNGGASTELQNRQPPSNSKPQKAKTTKAERRALQEAQRAAKGEAKKSSNAPGKAVKQSSTMRDSTAAPSVASTDKRGGDRTHDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTTKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLPESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIGRGLSCTYTHINAISYMMHKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDINHLENLAAKEQLQLLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLWI* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2204418 2210849 - CsaV3_1G003550.1 Csa01g00355 514852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00355 645 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 645 - -
Csa01g00355 645 Pfam Initiation factor 2 subunit family 337 628 IPR000649 GO:0044237
Csa01g00355 645 MobiDBLite consensus disorder prediction 194 213 - -
Csa01g00355 645 Gene3D - 431 638 IPR042529 -
Csa01g00355 645 MobiDBLite consensus disorder prediction 175 193 - -
Csa01g00355 645 MobiDBLite consensus disorder prediction 222 242 - -
Csa01g00355 645 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 645 - -
Csa01g00355 645 MobiDBLite consensus disorder prediction 1 64 - -
Csa01g00355 645 MobiDBLite consensus disorder prediction 246 278 - -
Csa01g00355 645 MobiDBLite consensus disorder prediction 35 51 - -
Csa01g00355 645 SUPERFAMILY NagB/RpiA/CoA transferase-like 291 638 IPR037171 -
Csa01g00355 645 MobiDBLite consensus disorder prediction 174 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00355 Csa-Chr1:2204418 Csa05g01660 Csa-Chr5:19732204 9.54E-19 dispersed
Csa01g00355 Csa-Chr1:2204418 Csa01g00356 Csa-Chr1:2213060 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00355 K03680 - csv:101214144 1269.22