Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00355 | ATGGATGCTCGCCGTGGCTCCCGCGTCGTCAACCCCAAAATCCGTCAGGTCGGATTCTTCACTCTCGACCCTCCCAATCCCCCCGGCCGTTCCCTCTCCGGTCCCGCCGATTGCACCCCTTCTCAACAGTCCCTCTCTCCTCCCTCCAATTCACTGTCTCCCGTCATGATTCCCCCTCCCCGTCATCTCTCTGATAACCTCGCTTCTCGCTCTGCCGTTTTTCCTCTTCCACCTCCCGCCAATTGGAGGGATTCCGCCGATCATATTCATGTTGGCAGCTATAACCCCTCCGAAATGCTTCTTGCTACTTCTCCTTCTGGTAGAATTGGGGATGAAGAGTTGGATATGTCAGAGGATTCTTTCACCTCCGTTCCGTATCGCCGGAGTGGTTCTGGGAAGATTGCCTCGAGCTTTCCTGGCGTTGGAATCTACATGGCGGCTAAGGCGTCGGAGACTTCACAGGCGATGGTTCCTAACACGGTGGAAGCTAATAAGTCTGTTGGGGTTGCAGAAAAGAATGGGGGGGCTTCCACAGAGTTACAGAATCGACAGCCACCATCAAATTCAAAACCCCAAAAGGCAAAAACCACGAAGGCTGAAAGACGTGCTCTACAGGAAGCACAACGAGCTGCAAAAGGTGAAGCAAAGAAGTCAAGTAACGCTCCTGGTAAAGCTGTGAAGCAGTCCTCGACTATGAGAGATAGCACTGCTGCACCTTCGGTGGCATCTACTGACAAAAGAGGAGGTGATCGCACACATGATAAAGAAAGGAAGAAAGATGCTCCACCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAAGGAACTCAGCTTCCTGATCTCGTGTCAAAGTTTTTCCAACTTGATCCCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTGCGATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAAAAGTCTCTGGGTAGAGATTTAACCACAAAAATTGGTGGCTATGTATCATTCTTCAACGAATGCAGGCCACTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAATCTCATTGCCAAATTACCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCGATCGCTTCATTAATGAAAAGATTATAATTGCAGACGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGGGATGTTCTTCTCACATATGGATCATCGTGTGCTGTAGAGATGCTCCTATTATATGCTCACGAGCTTGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTTCGTAGGCTCATAGGGAGGGGCCTAAGTTGTACATACACTCATATAAATGCTATTTCTTACATGATGCACAAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCGGTTGCCATGGTTGCTAACGCATTCCATGTTCCAGTGTTAATCTGCTGCGAAGCCTATAAATTCCACGAAAGGGTTCAGCTTGATTCAATATGTTTCAATGAATTAGGCGATCCAGATGCTATCTCAAAGGTTCCAGGAAGGAAGGATATTAATCATCTAGAAAATTTGGCTGCTAAAGAACAACTGCAACTTCTAAATTTAATGTACGACGCCACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGATCCCGCCTACAAGCGTGCCGGTGATCGTGCGTGAGTATCGGAGAGAGCACCTTTGGATATAA | 1938 | 46.18 | MDARRGSRVVNPKIRQVGFFTLDPPNPPGRSLSGPADCTPSQQSLSPPSNSLSPVMIPPPRHLSDNLASRSAVFPLPPPANWRDSADHIHVGSYNPSEMLLATSPSGRIGDEELDMSEDSFTSVPYRRSGSGKIASSFPGVGIYMAAKASETSQAMVPNTVEANKSVGVAEKNGGASTELQNRQPPSNSKPQKAKTTKAERRALQEAQRAAKGEAKKSSNAPGKAVKQSSTMRDSTAAPSVASTDKRGGDRTHDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTTKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLPESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIGRGLSCTYTHINAISYMMHKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDINHLENLAAKEQLQLLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLWI* | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2204418 | 2210849 | - | CsaV3_1G003550.1 | Csa01g00355 | 514852 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00355 | 645 | PANTHER | NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN | 1 | 645 | - | - | |
Csa01g00355 | 645 | Pfam | Initiation factor 2 subunit family | 337 | 628 | IPR000649 | GO:0044237 | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 194 | 213 | - | - | |
Csa01g00355 | 645 | Gene3D | - | 431 | 638 | IPR042529 | - | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 175 | 193 | - | - | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 222 | 242 | - | - | |
Csa01g00355 | 645 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 1 | 645 | - | - | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 246 | 278 | - | - | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 35 | 51 | - | - | |
Csa01g00355 | 645 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 291 | 638 | IPR037171 | - | |
Csa01g00355 | 645 | MobiDBLite | consensus disorder prediction | 174 | 278 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00355 | Csa-Chr1:2204418 | Csa05g01660 | Csa-Chr5:19732204 | 9.54E-19 | dispersed | |
Csa01g00355 | Csa-Chr1:2204418 | Csa01g00356 | Csa-Chr1:2213060 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00355 | K03680 | - | csv:101214144 | 1269.22 |