Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00356 ATGGATGCTCGCCGTGGCTCCCGCATCGTCAACCCCAAAGTTCGTCAGGTTGGATTCTTCACTCTCGACGCTCCTAATTCCCCCGACCGCTCCCTCTCCGGTCCCCCCAATTGTCTCCCTTCTCAACAATCCCTCTCTCCTCCCACCAATTCATTGTCTCCCGTCATGATTCCCCCTCCCCGTCATCTCTCCGACAACCTTGCATCACGTTCTGCTGTTCTTCCTGTTCCTGCTCCTGCCAATTGGAGGAATTCCACCGATCAGATCCCTGTTGGCAGTTATAACCCTTCCGAGACCCTGCTTGCGACATCCCCTATGGCGTCTCCTTCCAGTAGAACTGGGGATGAAGAGCTGGACATGTCTGAGGATTCTTCCAACTCCGTTTGGCATCGCCGGAGTGGTTCTGGGAAGATTGCCTCGAGCTTTCCTGGGGTTGGAATCCACGTGGGGGCTAAGTCGTTGGAGAACTCGCAGGCGGTGCCTCTTCAGACGTTGGAAACTAATAAGCCTGCTGGAGTTGGAGAAAAGACTGGAGGGCCATCCACGGAGGTACAGAATAGACAACCACCACCAAATTCTAAACCCCTGAAGGCAAAAACAACAAAGGCTGAAAGACGAGCTCTACAGGAGGCACAACGAGCTGCAAAAGTCTCTGCAAAAGGTGAGGCAAATAAGTCAGGTGCTGCTCCTGGTAAAGCTGTGAAGCAGCCTGCAGCTATGAAAGATAGCACTGCTGCACCTTCAGTTGCACCTACTGACAAAAGAGGAGGTGGTGATCGCACACTCGACAAAGAAAGGAAGAAAGATGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTGTTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCCGATCTTGTATCAAAGTTTTTTCAACTTGATTCCATTCATCCTGCAATTTACAAGGTTGGTTTGCAATATATGGCCAGAGACATATGCGGAGGCAATGCTCGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTAGCTATGTGTCCTTCTTCAATGAGTGCAGGCCACTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCGCATTGCCAAATTGCCACTGAATCTTCCGGAATCCGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATCATAATTGCAGATGAGGTTATAGTTAGACATGCTGCCACTAAAATCAGGGATGGAGATGTTTTACTCACATATGGATCGTCATCTGCTGTAGAGATGCTTATATTATATGCTCATGAGCTAGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACAAGAAGGGAAAGCGTTGCTTCGTAGGCTCATAGCGAGGGGCCTAAATTGCACATACACCCATATAAATGCCATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTAGGGGCTGCTGCAGTCTTATCTAACGGAACTGTTTATTCAAGAGTGGGAACTGCAGCTGTTGCTATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTACAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAACGAATTAGGTGATCCAGATACTATCTCAAAGGTTCCCGAGAGGAAGGATATTAATGATTTGGCTGCTAAAGAACAACTGCAACTTCTAAATTTAATGTATGACGCCACACCTTCAGATTACATCTCGATGATCGTCACAGATTATGGGATGATCCCACCTACAAGCGTGCCGGTGATTGTGCGGGAGTATAGGAGAGAGCACCTGTGGATATAA 1956 46.68 MDARRGSRIVNPKVRQVGFFTLDAPNSPDRSLSGPPNCLPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVLPVPAPANWRNSTDQIPVGSYNPSETLLATSPMASPSSRTGDEELDMSEDSSNSVWHRRSGSGKIASSFPGVGIHVGAKSLENSQAVPLQTLETNKPAGVGEKTGGPSTEVQNRQPPPNSKPLKAKTTKAERRALQEAQRAAKVSAKGEANKSGAAPGKAVKQPAAMKDSTAAPSVAPTDKRGGGDRTLDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDSIHPAIYKVGLQYMARDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGSYVSFFNECRPLSVSMGNAIRFLKNRIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSSAVEMLILYAHELGKEFRVVVVDSRPKQEGKALLRRLIARGLNCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDTISKVPERKDINDLAAKEQLQLLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLWI* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2213060 2218204 + CsaV3_1G003560.1 Csa01g00356 514853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00356 651 Gene3D - 440 644 IPR042529 -
Csa01g00356 651 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 651 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 81 111 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 77 144 - -
Csa01g00356 651 Pfam Initiation factor 2 subunit family 346 634 IPR000649 GO:0044237
Csa01g00356 651 SUPERFAMILY NagB/RpiA/CoA transferase-like 300 644 IPR037171 -
Csa01g00356 651 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 651 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 256 284 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 179 195 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 21 65 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 26 51 - -
Csa01g00356 651 MobiDBLite consensus disorder prediction 157 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00356 Csa-Chr1:2213060 Csa05g01660 Csa-Chr5:19732204 1.23E-18 dispersed
Csa01g00355 Csa-Chr1:2204418 Csa01g00356 Csa-Chr1:2213060 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00356 K03680 - csv:101215104 1284.63