Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00364 ATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTGTATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGCCATTGGGCACCCTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTGTATACCTCGAGAGCTTATCTGTTTATGGTTTCACTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATCGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGATGATGAAAGCATGAGTGATGAAGCAATATGGGAGACACTGCCTCATTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTACTGAAGCTTTCTGGGAACGTTGGTGCCCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCTGAGTGCTTTGCATTTCTTGTATGTACAAAGTGGTCTAATCCAGCAATTCATAGAAATATTCAAACAAGAGAACGTTGTTCATCATCATCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATTTGTGGCCTTCAAGACATTGGAGGACATATTATGAAAATTCCCATAATTATTTTTCAAATTCTACTATGCATGTATTTAGAGGGAACGCCTGCAGCTGCTAAAAATATGCCACTTCCCATCCTTTTCTCGCCTCTTTTTATGTTGCAAGGTGCTGCTGTTATTTATGCTACATCTAGATTGTTAGAGAAAGCAGTACTTCTCTTAAGAGGCGGATCTGGCACAGCATTGTATTTCAGTTTTTCAATTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAAGCAGTCGAGAGGAGCAGGCACGATTGTACCACGAGGGTGCCTCTGGGTACAATACTTTTAGCGGATATCCTCCCGAGGTTGTGAAGAAGATGCCCAAGAAAGATCTTGCAGAGGAGGTGTGGCGCCTTCAAGCTGCTCTTGGAGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTTGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCGTACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCGATATGTCGCGTTGTTATCGAAGAACGCTTGCCGGTATATGATGTATAG 1404 42.95 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVVFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCVYLESLSVYGFTAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSSVVRYLDWNSGLIVYPEQDQHQDRICGLQDIGGHIMKIPIIIFQILLCMYLEGTPAAAKNMPLPILFSPLFMLQGAAVIYATSRLLEKAVLLLRGGSGTALYFSFSIRAHACLEFFHHGSRLLGWWSIDESSREEQARLYHEGASGYNTFSGYPPEVVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCSEKCKKCPICRVVIEERLPVYDV* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2271371 2280360 + CsaV3_1G003640.1 Csa01g00364 514861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00364 467 SMART ring_2 420 454 IPR001841 -
Csa01g00364 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Csa01g00364 467 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Csa01g00364 467 SUPERFAMILY RING/U-box 411 462 - -
Csa01g00364 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Csa01g00364 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Csa01g00364 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
Csa01g00364 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00364 Csa-Chr1:2271371 Csa03g00187 Csa-Chr3:1398248 2.86E-10 dispersed
Csa01g00364 Csa-Chr1:2271371 Csa02g01301 Csa-Chr2:12650213 5.05E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00364 - - csv:101215825 944.11