Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00364 ATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTGTATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGCCATTGGGCACCCTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTGTATACCTCGAGAGCTTATCTGTTTATGGTTTCACTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATCGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGATGATGAAAGCATGAGTGATGAAGCAATATGGGAGACACTGCCTCATTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTACTGAAGCTTTCTGGGAACGTTGGTGCCCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCTGAGTGCTTTGCATTTCTTGTATGTACAAAGTGGTCTAATCCAGCAATTCATAGAAATATTCAAACAAGAGAACGTTGTTCATCATCATCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATTTGTGGCCTTCAAGACATTGGAGGACATATTATGAAAATTCCCATAATTATTTTTCAAATTCTACTATGCATGTATTTAGAGGGAACGCCTGCAGCTGCTAAAAATATGCCACTTCCCATCCTTTTCTCGCCTCTTTTTATGTTGCAAGGTGCTGCTGTTATTTATGCTACATCTAGATTGTTAGAGAAAGCAGTACTTCTCTTAAGAGGCGGATCTGGCACAGCATTGTATTTCAGTTTTTCAATTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAAGCAGTCGAGAGGAGCAGGCACGATTGTACCACGAGGGTGCCTCTGGGTACAATACTTTTAGCGGATATCCTCCCGAGGTTGTGAAGAAGATGCCCAAGAAAGATCTTGCAGAGGAGGTGTGGCGCCTTCAAGCTGCTCTTGGAGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTTGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCGTACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCGATATGTCGCGTTGTTATCGAAGAACGCTTGCCGGTATATGATGTATAG 1404 42.95 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVVFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCVYLESLSVYGFTAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSSVVRYLDWNSGLIVYPEQDQHQDRICGLQDIGGHIMKIPIIIFQILLCMYLEGTPAAAKNMPLPILFSPLFMLQGAAVIYATSRLLEKAVLLLRGGSGTALYFSFSIRAHACLEFFHHGSRLLGWWSIDESSREEQARLYHEGASGYNTFSGYPPEVVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCSEKCKKCPICRVVIEERLPVYDV* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2271371 2280360 + CsaV3_1G003640.1 Csa01g00364 514861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00364 467 SMART ring_2 420 454 IPR001841 -
Csa01g00364 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Csa01g00364 467 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Csa01g00364 467 SUPERFAMILY RING/U-box 411 462 - -
Csa01g00364 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Csa01g00364 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Csa01g00364 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
Csa01g00364 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00364 - - - csv:101215825 944.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00364 Csa-Chr1:2271371 Csa03g00187 Csa-Chr3:1398248 2.86E-10 dispersed
Csa01g00364 Csa-Chr1:2271371 Csa02g01301 Csa-Chr2:12650213 5.05E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g363 . . Bda06g00490 Bda15g00656 Bpe12g00498 . . Bma12g00940 . . Cma10g00248 Cma11g00257 Car10g00236 Car11g00236 . . Cpe04g01416 . . . . . . . Cla06g01484 Cam06g1639 Cec06g1699 Cco06g1697 Clacu06g1605 Cmu06g1554 Cre06g2366 . . . . . . . . . Blo15g00366 . . Bpe07g00730 . . . . . Cmo11g00263 . . . . . Cpe18g00744 . . . . . . . . . . . . . . Lsi06g01347 Csa01g00364 Chy02g02379 Cme02g01764
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00815 . 83 555 C3H Transcription Factor Family AT2G31510 77.2 6.6e-229 790.0
Csa06g00382 . 77 529 C3H Transcription Factor Family AT2G31510 78.1 2.7e-222 768.1
Csa02g00815 . 52 529 C3H Transcription Factor Family AT2G31770 56.6 9.4e-168 587.0
Csa06g00382 . 60 522 C3H Transcription Factor Family AT2G31770 58.9 1.4e-166 583.2
Csa02g00815 . 66 529 C3H Transcription Factor Family AT2G31760 57.8 6.8e-168 587.4
Csa06g00382 . 60 529 C3H Transcription Factor Family AT2G31760 57.8 2.2e-166 582.4
Csa06g02730 . 13 170 C3H Transcription Factor Family AT5G06490 54.2 4.4e-46 181.4
Csa03g03507 . 12 158 C3H Transcription Factor Family AT5G06490 50.3 1.4e-39 159.8
Csa06g02730 . 13 170 C3H Transcription Factor Family AT5G06490 54.2 4.4e-46 181.4
Csa03g03507 . 12 158 C3H Transcription Factor Family AT5G06490 50.3 1.4e-39 159.8
Csa05g03051 . 1 226 C3H Transcription Factor Family AT3G02290 61.5 4.0e-75 278.1
Csa01g01955 . 1 306 C3H Transcription Factor Family AT1G11020 75.1 1.8e-134 475.7
Csa03g02748 . 62 220 C3H Transcription Factor Family AT1G50440 75.6 9.0e-67 250.4
Csa04g02044 . 5 367 C3H Transcription Factor Family AT5G08750 60.1 2.4e-119 425.6
Csa02g00358 . 1 418 C3H Transcription Factor Family AT3G16090 73.3 8.6e-168 587.0
Csa06g00273 . 31 186 C3H Transcription Factor Family AT1G22510 68.6 3.3e-57 218.4
Csa05g03051 . 1 225 C3H Transcription Factor Family AT5G38895 56.6 1.7e-71 266.5
Csa02g02021 . 16 227 C3H Transcription Factor Family AT1G19310 66.4 1.2e-79 293.1
Csa06g02866 . 16 226 C3H Transcription Factor Family AT1G19310 61.4 1.5e-71 266.2
Csa06g00273 . 35 186 C3H Transcription Factor Family AT1G72175 68.4 9.7e-54 206.5
Csa06g03191 . 9 288 C3H Transcription Factor Family AT2G22120 82.3 1.8e-138 489.2
Csa01g00364 . 1 389 C3H Transcription Factor Family AT1G18470 75.8 1.2e-178 622.9
Csa05g02054 CCT,ECH 83 300 C3H Transcription Factor Family AT1G68200 51.5 4.1e-51 198.7
Csa02g00815 . 52 529 C3H Transcription Factor Family AT2G31770 56.6 9.4e-168 587.0
Csa06g00382 . 60 522 C3H Transcription Factor Family AT2G31770 58.9 1.4e-166 583.2
Csa02g00815 . 66 529 C3H Transcription Factor Family AT2G31760 57.8 6.8e-168 587.4
Csa06g00382 . 60 529 C3H Transcription Factor Family AT2G31760 57.8 2.2e-166 582.4
Csa07g01298 . 46 273 C3H Transcription Factor Family AT5G55970 69.4 9.1e-94 340.5
Csa07g01299 . 14 246 C3H Transcription Factor Family AT5G55970 67.4 1.2e-93 340.1
Csa04g02044 . 5 367 C3H Transcription Factor Family AT5G63780 57.3 4.8e-115 411.4
Csa03g03565 . 1 425 C3H Transcription Factor Family AT3G58030 53.7 6.8e-108 387.9
Csa07g01299 . 3 316 C3H Transcription Factor Family AT4G26580 61.9 3.7e-114 408.3
Csa07g01298 . 39 336 C3H Transcription Factor Family AT4G26580 61.6 8.6e-111 397.1
Csa04g01716 . 1 472 C3H Transcription Factor Family AT5G01960 69.1 5.7e-168 587.4
Csa05g00916 . 1 487 C3H Transcription Factor Family AT5G01960 57.2 4.1e-150 528.1
Csa06g00974 CCT 1 156 C3H Transcription Factor Family AT2G04240 59.5 3.4e-44 174.9
Csa07g00240 . 1 155 C3H Transcription Factor Family AT2G04240 53.7 5.2e-37 151.0
Csa06g02515 . 66 277 C3H Transcription Factor Family AT5G19430 54.2 4.6e-56 214.9
Csa04g00707 . 130 584 C3H Transcription Factor Family AT5G45290 50.9 3.4e-101 365.9
Csa06g02515 . 73 277 C3H Transcription Factor Family AT5G12310 65.0 3.2e-57 218.8
Csa01g02205 . 73 367 C3H Transcription Factor Family AT5G05810 53.3 3.7e-76 282.3
Csa06g00156 . 43 215 C3H Transcription Factor Family AT5G05830 62.4 2.7e-59 225.3
Csa03g03129 . 70 231 C3H Transcription Factor Family AT5G05830 62.3 5.3e-55 211.1
Csa05g03051 . 1 226 C3H Transcription Factor Family AT5G15790 58.6 8.4e-73 270.4
Csa06g00126 . 126 397 C3H Transcription Factor Family AT3G55530 80.6 3.2e-116 414.8
Csa07g01765 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 2.1e-118 422.2
Csa03g01028 . 10 394 C3H Transcription Factor Family AT2G44580 53.9 3.4e-119 425.2
Csa02g02021 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 8.5e-41 163.3
Csa04g02600 . 4 314 C3H Transcription Factor Family AT5G20910 57.9 6.5e-97 350.9
Csa02g00358 . 119 419 C3H Transcription Factor Family AT1G65040 68.6 4.0e-110 394.8
Csa06g02866 . 21 228 C3H Transcription Factor Family AT2G23780 63.4 4.8e-73 271.2
Csa02g02021 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 4.7e-68 254.6
Csa03g03701 CCT 1 318 C3H Transcription Factor Family AT3G10810 54.4 6.8e-80 295.0
Csa05g00260 . 1 171 C3H Transcription Factor Family AT1G63840 58.2 1.8e-48 189.1
Csa05g01999 . 18 354 C3H Transcription Factor Family AT1G68070 64.5 2.5e-118 422.2
Csa03g00354 . 47 376 C3H Transcription Factor Family AT1G68070 51.4 3.0e-87 318.9
Csa04g02726 . 4 181 C3H Transcription Factor Family AT1G76410 55.6 1.9e-51 199.1
Csa02g02343 . 1 361 C3H Transcription Factor Family AT1G80400 51.7 3.8e-89 325.5
Csa02g00815 . 83 555 C3H Transcription Factor Family AT2G31510 77.2 6.6e-229 790.0
Csa06g00382 . 77 529 C3H Transcription Factor Family AT2G31510 78.1 2.7e-222 768.1
Csa06g02730 . 10 169 C3H Transcription Factor Family AT2G35910 64.2 1.4e-53 206.5
Csa03g03507 . 8 158 C3H Transcription Factor Family AT2G35910 53.5 5.0e-43 171.4
Csa04g01349 . 28 324 C3H Transcription Factor Family AT2G41980 72.6 2.4e-128 455.3
Csa03g01989 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.2e-128 454.9
Csa03g01990 . 62 319 C3H Transcription Factor Family AT2G41980 80.2 4.1e-128 454.5
Csa05g02847 . 31 305 C3H Transcription Factor Family AT2G41980 76.7 2.7e-127 451.8
Csa05g01662 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 1.5e-125 446.0
Csa06g00720 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 1.8e-123 439.1
Csa03g01372 . 124 398 C3H Transcription Factor Family AT3G06140 62.0 7.8e-94 340.9
Csa03g03269 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 5.7e-86 314.7
Csa03g02570 . 129 673 C3H Transcription Factor Family AT3G26730 54.1 1.5e-160 563.5
Csa01g00157 CCT 58 366 C3H Transcription Factor Family AT3G47990 69.2 4.5e-127 451.1
Csa01g00843 CCT 58 341 C3H Transcription Factor Family AT3G47990 70.6 2.0e-119 425.6
Csa02g02174 . 105 213 C3H Transcription Factor Family AT1G72220 64.5 7.0e-38 155.2
Csa04g02726 . 4 186 C3H Transcription Factor Family AT1G20823 57.5 2.2e-53 205.7
Csa02g01220 . 49 421 C3H Transcription Factor Family AT3G18930 53.1 8.4e-84 307.8
Csa03g00054 . 20 236 C3H Transcription Factor Family AT5G66070 74.7 2.9e-75 278.5
Csa03g03222 . 3 272 C3H Transcription Factor Family AT5G02750 51.9 1.0e-64 243.8
Csa01g00364 . 5 468 C3H Transcription Factor Family AT1G73950 73.1 3.7e-199 691.0
Csa05g03127 . 20 160 C3H Transcription Factor Family AT1G33480 55.3 3.6e-40 162.2
Csa05g01999 . 15 252 C3H Transcription Factor Family AT2G01735 62.5 4.4e-75 278.1
Csa03g00354 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 6.8e-52 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002572 3 4 3 2 3 1 3 1 0 0 1 1 3 1 1 3 1 3 3 0 1 3 2 2 2 0 2 3 5 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00364 Csa_Chr01 FPKM 7.701067 7.698107 17.275061 16.545265 14.024292 15.56805 16.72011 11.935598 10.708894 12.030327