Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00365 ATGAGCAGGTCCCCTTCATTCTCTGTGAAATCAGAAGTTAATGTGAAGTTGGATCCAGAATCTCTTCAAAAATGGGTTGTGGCCTTTTGCATTATTAGGTTTGATCTTGAACAGGGTCAACTCATTGAGGAGTGCTATCCTCCAGACTGTCTTACTCAAGATGAGGAACTTGAAGTTGCGTTTAGTTCATTTCCCGATTCAATTTCGCAGCACCAGAACCGTTCAAGCATTCATGATTGTATCTTCTTTTTCCGGCTTCGAAGGAAGGGAGTTTCTCAACCAAGAAATATATCTTCTGAGATAACTGAAGTGGATGAGTTATCACAAAATACCAATGACTCTAAACTTCCAAGATCAAAGAGCAGCCTTGGTACCAAGCCCAAGTACATGTATGGTTTTGTTTTTAATAGGCAGAGACACGATGAGAGGCTAAGAAGAGGTGGAGAGCAGAAGTCTGTGGTAATTCTGTCTCATAGTCCTTATTCTACTGTCTTTAAACCTCTGTTGCAAATCATGGGTCCATTATATTTTGACATCGGGAGGAGGGCTCTTGAGCATATTGCTGCTTATGTTTCGATGTGGCCTGCTCCAGTGCCCGGTAAACAAATGGAGCTTCCTATTGGAAATGCCATGCTTAAAGCACACTTGCCACCTGTTCATAGTCTGGTAATGGATGGTGAGACATTTTCCGAAGAGTCTACATCCTCTATGGCTCCTTTTCTTCCCAATAATCAGTCAGTTCCTCAGGGTCTTTTCCATGATTCTGATCTCTTTGGTACATTCCGGGGTCTTCTTTTGCAGCTCTGGCTGTTGTGGGAGTTGCAGCTTATTGGTGAACCCATCCTTATCATTGCACCAACGCCTCCCCAGTGTTGTGAAGCTGTTGCTGGTCTTGTTAGCTTGGTTGCTCCTCTTCTTTGTAGTGTTGATTTCAGACCTTATTTCACCATTCATGACCCTGAGTTTTCACGTTTAAACGCACTTCAAGATGGAGCTACTTTCCCACCAATGGTTTTAGGGGTGACGAATCTTTTTTTCCTTAAAGCTCTTCGTAATATTCCTCATATTGTCTCAGTTGGAAACCCTGCTGTTAATCGGCTTGCCCAGACATCCAGGTCCTCTTCAGGTAGTGTTCCTGGCGCACCTGAAGGGTTTGGATTTCGACAACTATCCCTGAAAAAATTCTCCCCGTCAAACTTGCTCAATGCTGTCAAGTTGAGGAGAGATGGTCCGCTATGCCTCATGACGGAACATAAGGAAGCCATCTGGAGCACATACCCTGCAGCAATGAAGCCAGACACATCGATCTTGAATCGGCTTATTGATGCTGGCTTATCACCAAGGGTTGAGGAGTCTATGTCTGTTGTCAACAATGAGATACTGCGTCGGCATTTCCTGGAACTTACTACCAACTTTTTGGCTCCTTTTGGGCCGTACTTCCGAACCACCACTCCTTCAGAAGGATGTTCACCATTTGATGAGCCTTCTCGTCCCCAATTTAGTGCTGATGAATTTCTTGCCAATCTATCAACGAGAGGTCCAGGAAAATTTTTGGCTAAGCGAATGAGATCTAACTGGCTGGATTTGTACAGGCGGTTTCTCAAAGGACCAAACTTCATGCCTTGGTTTCAAAGGAGGTGTGCTGTTGCAGAACAAGAACAGCATAGACTATGGAGGCAAGCAAGAATGAATTCTGATATACCACGGCTTATGTCTAAAATGCCTGAATTGGAAGTTGTTGATTTATTTAATGCGATTGAAAGACATCTTCTAAGAGAAATGGAGCTGCAGGAATCCAGGAGAGCTTATGTAGACTCTGTGGCAACTTGTCAGAAACTGAAAGGGGATCTGCTGACTGTTTTCAATGTGCTTCCTAAAGACATGCAACAACTCTTGCTTCTTAATCCACAAAGGGCATCTCTTCTCCGTGGAAGTCCTGAACCAGCGAAACTTCCAGGGCGTCCGCTTGTACAAGTTGGTGTTGTATCACCAAGATAG 1998 44.09 MSRSPSFSVKSEVNVKLDPESLQKWVVAFCIIRFDLEQGQLIEECYPPDCLTQDEELEVAFSSFPDSISQHQNRSSIHDCIFFFRLRRKGVSQPRNISSEITEVDELSQNTNDSKLPRSKSSLGTKPKYMYGFVFNRQRHDERLRRGGEQKSVVILSHSPYSTVFKPLLQIMGPLYFDIGRRALEHIAAYVSMWPAPVPGKQMELPIGNAMLKAHLPPVHSLVMDGETFSEESTSSMAPFLPNNQSVPQGLFHDSDLFGTFRGLLLQLWLLWELQLIGEPILIIAPTPPQCCEAVAGLVSLVAPLLCSVDFRPYFTIHDPEFSRLNALQDGATFPPMVLGVTNLFFLKALRNIPHIVSVGNPAVNRLAQTSRSSSGSVPGAPEGFGFRQLSLKKFSPSNLLNAVKLRRDGPLCLMTEHKEAIWSTYPAAMKPDTSILNRLIDAGLSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTTTPSEGCSPFDEPSRPQFSADEFLANLSTRGPGKFLAKRMRSNWLDLYRRFLKGPNFMPWFQRRCAVAEQEQHRLWRQARMNSDIPRLMSKMPELEVVDLFNAIERHLLREMELQESRRAYVDSVATCQKLKGDLLTVFNVLPKDMQQLLLLNPQRASLLRGSPEPAKLPGRPLVQVGVVSPR* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2281308 2287899 + CsaV3_1G003650.1 Csa01g00365 514862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00365 665 MobiDBLite consensus disorder prediction 102 121 - -
Csa01g00365 665 ProSiteProfiles Tripartite DENN domain profile. 27 544 IPR037516 -
Csa01g00365 665 MobiDBLite consensus disorder prediction 102 124 - -
Csa01g00365 665 PANTHER UNCHARACTERIZED 1 638 IPR024224 GO:0005085
Csa01g00365 665 Pfam Stabilization of polarity axis 260 361 - -
Csa01g00365 665 PANTHER LD41638P 1 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00365 - - - csv:101216067 1332.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g361 . . Bda06g00489 Bda15g00657 . . . Bma12g00939 . . Cma10g00247 Cma11g00259 Car10g00234 Car11g00237 . . Cpe04g01415 . . . . . . . Cla06g01483 Cam06g1638 . Cco06g1696 Clacu06g1604 Cmu06g1553 . . . Cone13ag0298 Cone19ag0267 . . . . . Blo15g00367 . . Bpe07g00729 . . . . Cmo10g00267 Cmo11g00265 . . . . . Cpe18g00745 . . . . . . . . . . . . . . . Csa01g00365 . Cme02g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006560 1 1 1 2 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00365 Csa_Chr01 FPKM 0.379739 0.668766 0.808741 0.953019 2.253742 1.638104 2.274585 4.592067 4.314662 4.685429