Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00369 ATGGCCACTACCTTCCTCAGCTGCGGTCCGTTTTTACGCCACCACTCTCATTTCTCCAAATTCTTCTTTTGCTGCTCTAACGATGCTGCCGATGCTTCTTCCACATCGTCATTACCAAAATCAACCACTAGCTCTTACTACACCCGTCGATGGTACAACCCCTCCGGCCGAAGACAATTGAACCAAGAAGGTGTTCAAATTCTGCGCCACTGGATTGAGACTGATCAACCTTCCGCTTCTGAAGAAAAGTTTAGTGTGGTGTCATACAACATATTGGCTGAAAGGAATACATGGAAACACAGAGGTTTATATCCCAATGTTCCTTCACCGTACCTGAAATGGAACCATCGTAAGAGAGTTATATGTGAGGAACTTCTTATGTGGAACCCTGATATAATCTGCTTGCAGGAAGTGGACAAGTATTTTGATGTTTCAGAAATCATGGAGAAAGCCGGTTACGTTGGGTCATACACGAGACGCACTGGAGACGCTATTGATGGATGTGCTATATTCTGGAAAGCTGACAAGTTTCGACTGATAGATGAAGAGAGCATCAAATTCAAGATGTTCAATCTTCGTGATAATGTTGCTCAACTTTCTGTGCTAGAGATGTCCAAAGCTAAATCAAGAAGATTACTAATTGGTAACATCCATGTGCTTTACAACCCAAGCAGGGGGGACGTCAAATTAGGTCAATTACGTTATCTGTTGTCAAGGGCAGAGATTCTTTCTAAGAAATGGAGAAATCTTCCTTTTGTTCTTGCTGGTGATTTCAATAGTACTCCTGAGAGCGCAATATACAATTTCTTATCATCATCAGAGCTAAATTTCATGTCCTATGACCGAAGAGAATTGTCTGGACAATCGGGATGTCATCCTGATAAAGTTTTGGGTGTAAAAACAGAAGTGTGCGCACCTTTTTTCTTTTTGGGAAGTCAAACAAAAGGTCTGTGGACTGAAGAAGAGGTGAAAGTTGCTACTGGCAGTGCTGACTGCAAAGTGGTGAGGAATCCCTTCAGGCTTACCAGCTCCTATGCTACAATAAAGGGTCCTCCTACAACACGGGGATCCACTGATGAACCATTGGCTACTTCCTACCACTCCAAGTTTCTTGGAACTGTCGATTATATTTGGTACTCTGATGGCCTTATTCCTATAAGGGTTGTTGATACTGTTCCAATTGATATTCTTCTGAAAACAGGCGGCCTTCCATGCGAGAAGGTGGGCAGCGATCATTTACCCTTGGTTTCTGAAATTGCCTTTACAAGAACATCAGAATAA 1281 42.62 MATTFLSCGPFLRHHSHFSKFFFCCSNDAADASSTSSLPKSTTSSYYTRRWYNPSGRRQLNQEGVQILRHWIETDQPSASEEKFSVVSYNILAERNTWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKYFDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSVLEMSKAKSRRLLIGNIHVLYNPSRGDVKLGQLRYLLSRAEILSKKWRNLPFVLAGDFNSTPESAIYNFLSSSELNFMSYDRRELSGQSGCHPDKVLGVKTEVCAPFFFLGSQTKGLWTEEEVKVATGSADCKVVRNPFRLTSSYATIKGPPTTRGSTDEPLATSYHSKFLGTVDYIWYSDGLIPIRVVDTVPIDILLKTGGLPCEKVGSDHLPLVSEIAFTRTSE* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2302142 2306176 - CsaV3_1G003690.1 Csa01g00369 514866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00369 426 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 22 423 - -
Csa01g00369 426 SUPERFAMILY DNase I-like 83 419 IPR036691 -
Csa01g00369 426 Gene3D Endonuclease/exonuclease/phosphatase 60 426 IPR036691 -
Csa01g00369 426 Pfam Endonuclease/Exonuclease/phosphatase family 88 412 IPR005135 GO:0003824
Csa01g00369 426 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 22 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00369 - - - csv:101217812 845.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00369 Csa-Chr1:2302142 Csa01g00379 Csa-Chr1:2354015 2.02E-106 dispersed
Csa01g00369 Csa-Chr1:2302142 Csa07g00461 Csa-Chr7:3322150 8.03E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g352 . . . Bda15g00522 Bpe12g00687 . . . . . Cma10g00244 . Car10g00230 . . . . . . . . . . . Cla06g01480 Cam06g1635 Cec06g1697 Cco06g1692 Clacu06g1601 Cmu06g1550 Cre06g2362 . . . . . . . . . . . . . . . Bma08g00068 . Cmo10g00261 . . . . . . Cpe18g00749 . . . . . . . . . . . . . . Lsi06g01343 Csa01g00369 Chy02g02376 Cme02g01758
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011598 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 0 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00369 Csa_Chr01 FPKM 13.306779 15.252751 44.846764 47.091549 3.971952 3.588702 4.836311 101.555336 104.745537 108.656937