Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00370 ATGTATGGTGGTGACGAGGTATCTGCTATAGTTATTGATCTGGGTTCTCACACTTGCAAAGCTGGTTATGCTGGAGAAGATGCTCCTAAGGCTGTTTTCCCTTCTGTTGTTGGATGTACCGATGAAATGGATGTTGATGACACTACAAGTACCGAAAAGAACTCTGGATCTGCTGGAGAATCTAAGAGTAATGCTAAAACTCTCGACTCCGATAAAGGCAAGGGAAAACGCAAACTATATGTTGGTTCTCAAGCTTTAGGGTTCCGCCGTGATAATATGGAGGTACTCTCGCCTATTAAGGATGGAGTTGTTGTTGACTGGGATATGGTCGATAGCATATGGGATCATGCTTTCAGGGAATGTCTACTTATTGATCCCCAAGAACATCCAATGCTACTTGCAGAACCATCTTCTAATTCACAACAACAGAGAGAAAAGACGGCTGAGATTATGTTTGAGAAGTACAAAGTTCCTGCATTGTTTTTGGCAAAAAATGCTGTTCTCACGTCATTTGCATCAGGTCGTGCTACATCACTCGTTGTTGACAGTGGTGGTGGATCAACAACTGTCGCTCCGGTACATGATGGCTATGTTTTTCAAAAGGCTGTTGTATCTTCTCCTGTTGGTGGAGATTTTCTTACTGATTGTTTGTTAAAAAGTTTGGAGAGCAAAGGTATCAAGATAATGCCAAGATACTCCTTCAAGAGAAAGGAAATTCGACCAGGAGAATTTCAGATAGTGGAACTTGATTTCCCAAACACAACTGAAAGTTACAAACTGTACTCACAGAGGGTCATTGCCAGTGATATAAAAGAATGTGTATGCCGAGCACCAGATACTCCTTATGATGAAAGTGCATATTCAAATATCCCAATGACGCCATATGAACTTCCTGATGGCCAGACTATTGAGATTGGAGCCGACAGATTCAAGATTCCTGATGTTCTATTTAACCCGTCCTTAGTGCAGACTATACCTGGGATGGAGAGTTTCACTGAAACAGCTCGCTCGGTTCAGGGATTGCCGCATATGGTAATCGAGAGTATAAATAAATGTGATGTGGATATTCGGAGAGAACTATTTAGCAGTATACTGCTTGCTGGTGGAACAGCTTCAATGCAACAGCTTAAAGAACGTCTTGAGAAAGATTTGTTAGAGGAGTCTCCTCAAGCTGCTAGGGTTAAAGTATTGGCAAGCGGTAATGCAACAGAAAGAAGATTCAGTGTCTGGATTGGAGGGAGTATATTGGCCTCTCTTGGTTCATTTCAGCAAATGTGGTTCTCCAAATCCGAGTTCGAAGAACATGGGGCTTCCTACATTCAAAGAAAATGCCCGTAG 1338 42.15 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGCTDEMDVDDTTSTEKNSGSAGESKSNAKTLDSDKGKGKRKLYVGSQALGFRRDNMEVLSPIKDGVVVDWDMVDSIWDHAFRECLLIDPQEHPMLLAEPSSNSQQQREKTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVFQKAVVSSPVGGDFLTDCLLKSLESKGIKIMPRYSFKRKEIRPGEFQIVELDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLVQTIPGMESFTETARSVQGLPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEFEEHGASYIQRKCP* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2306890 2315293 - CsaV3_1G003700.1 Csa01g00370 514867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00370 445 PANTHER ACTIN 2 444 IPR004000 -
Csa01g00370 445 MobiDBLite consensus disorder prediction 44 75 - -
Csa01g00370 445 Pfam Actin 4 444 IPR004000 -
Csa01g00370 445 PANTHER - 2 444 - -
Csa01g00370 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Csa01g00370 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Csa01g00370 445 SMART actin_3 7 445 IPR004000 -
Csa01g00370 445 CDD NBD_sugar-kinase_HSP70_actin 97 198 - -
Csa01g00370 445 Gene3D - 389 445 - -
Csa01g00370 445 Gene3D - 4 183 - -
Csa01g00370 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Csa01g00370 445 Gene3D - 184 384 - -
Csa01g00370 445 MobiDBLite consensus disorder prediction 50 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00370 K11340 ACTL6A, INO80K; actin-like protein 6A - csv:101218049 879.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00370 Csa-Chr1:2306890 Csa07g00510 Csa-Chr7:3678055 5.82E-93 dispersed
Csa01g00370 Csa-Chr1:2306890 Csa04g01489 Csa-Chr4:14638865 3.00E-92 transposed
Csa01g00370 Csa-Chr1:2306890 Csa02g01593 Csa-Chr2:15080935 3.72E-92 transposed
Csa01g00370 Csa-Chr1:2306890 Csa06g02804 Csa-Chr6:24455342 3.72E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g350 . . Bda06g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0697 . . . . . . . . . . . Bpe07g00726 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00370 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00370 Csa_Chr01 FPKM 38.012047 41.087517 336.418884 335.532959 37.051338 40.423672 36.603363 26.600153 24.697529 28.326008