Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00379 ATGATCGGCAAAAACCACGATGAACCATTGTCTCTCATGGACATTCCCGCCAAAACAGACAAGAATAAGCGCAAACCTTCGACAAGCGCGGCTCCCAACGATCACCGGAAGAAGAGGCGGAGATTAGCAGTTAGTTCAGAAACTGCAATCCCTAAATCTAGCGACCCTCAAAAGCTTGCCGCATCGAGTAGGTTAAAGACAATTTGTTCTCCCTCTCGAACCTCACGGAAACACGGGAAGAGGAGGTCCAGTCAGACGGATGGTCATCGTCGATGGGTCTACTCTGCTCGTGATTGCTCAAGATTTATAGGAGTGGAAAATGCATTGAATCATCCAGATTTATATCATAGAGTGCCTTCCAAATTCTTGGATTGGAGTTTCCGGAAAGAGCTTATATGCAATGCAATTAAATTTTATAATGCAGGCATCTTATGTTTGCAGGAGGTTGACCGTTTTGATGATTTAGATGAACTTTTCCAAAATTATGGCTACAAAGGTGTTTACAAGGCTAGAACTGGTGAAGCAAATGATGGATGTGCTGTATTTTGGATCGACAAACTATTTTCCCTTTTGCATCAAGAAACTATAGAGTTCCAGAACTTTGGGCTACGCAACAATGTTGCTCAACTATGTGTTTTGAAGATGAATAAATCAAAATCAAAGTCCAAAACAAGTCGAAGCTTTGTGATTGGGAATATACACGTTCTTTTCAACCCAAATCGGGGAGACATTAAGCTCGGGCAGGTCAGATTGTTTCTTGAAAAAGCACATAGCCTTTCCCAGAGATGGGGAAACGTTCCTGTTATTATTGCTGGGGATCTGAATAGCATACCGAAGAGTGCAATCTATCAATTTTTGGCTTCATCAGAGCTGGATATACAACTTCATGATCGCAGAAAGATTTCAGGGCAACTGGATTTTTCATCATCACATGGAGCCTTCAGATTTTGTAGTGGGGGTACAAAATGGTCCAATGTTTCAACCTCCAAATCTTTCGGTTGGAGTGATGAGGAAATAAGAATTGCATCTGGTAGCGAGAATGTTACCCGTCTTCAGCACCCATTAAAGCTTTCCAGTGCATACTATGGGATTCCAGGAAGTTATAAAACAAGAGATACAAATGGAGAACCTTTAGTAACTTCATTCCACTCCAAGTTTATGGGAACTGTTGATTATATATGGCACTCGGAAAAACTTGCTCCTGTTAGAGTTTTGGAAACATTGCCTGTTGATGCATTAAAGAAAACTGGAGGACTTCCAAATGAGAAATGGGGCAGTGATCATCTTGCTCTTGTATGCGAACTGGCCTTTGATGACGATGAAAATGACAGTTGA 1335 41.5 MIGKNHDEPLSLMDIPAKTDKNKRKPSTSAAPNDHRKKRRRLAVSSETAIPKSSDPQKLAASSRLKTICSPSRTSRKHGKRRSSQTDGHRRWVYSARDCSRFIGVENALNHPDLYHRVPSKFLDWSFRKELICNAIKFYNAGILCLQEVDRFDDLDELFQNYGYKGVYKARTGEANDGCAVFWIDKLFSLLHQETIEFQNFGLRNNVAQLCVLKMNKSKSKSKTSRSFVIGNIHVLFNPNRGDIKLGQVRLFLEKAHSLSQRWGNVPVIIAGDLNSIPKSAIYQFLASSELDIQLHDRRKISGQLDFSSSHGAFRFCSGGTKWSNVSTSKSFGWSDEEIRIASGSENVTRLQHPLKLSSAYYGIPGSYKTRDTNGEPLVTSFHSKFMGTVDYIWHSEKLAPVRVLETLPVDALKKTGGLPNEKWGSDHLALVCELAFDDDENDS* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2354015 2361755 - CsaV3_1G003790.1 Csa01g00379 514876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00379 444 MobiDBLite consensus disorder prediction 47 70 - -
Csa01g00379 444 MobiDBLite consensus disorder prediction 1 89 - -
Csa01g00379 444 MobiDBLite consensus disorder prediction 71 85 - -
Csa01g00379 444 SUPERFAMILY DNase I-like 122 436 IPR036691 -
Csa01g00379 444 MobiDBLite consensus disorder prediction 11 33 - -
Csa01g00379 444 Pfam Endonuclease/Exonuclease/phosphatase family 119 428 IPR005135 GO:0003824
Csa01g00379 444 Gene3D Endonuclease/exonuclease/phosphatase 103 443 IPR036691 -
Csa01g00379 444 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 327 437 - -
Csa01g00379 444 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 80 305 - -
Csa01g00379 444 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 80 305 - -
Csa01g00379 444 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 327 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00379 - - - csv:101203382 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00369 Csa-Chr1:2302142 Csa01g00379 Csa-Chr1:2354015 2.02E-106 dispersed
Csa01g00379 Csa-Chr1:2354015 Csa03g04353 Csa-Chr3:38020973 7.77E-23 dispersed
Csa01g00379 Csa-Chr1:2354015 Csa07g00461 Csa-Chr7:3322150 1.64E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g331 . . . . Bpe12g00689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe18g00755 . . . . . . . . . . . . . . . Csa01g00379 . Cme02g01745
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00379 Csa_Chr01 FPKM 121.33638 127.870728 0.558788 0.557898 0.463117 0.51294 0.568614 0.0 0.0 0.0