Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00381 ATGGAAACAAATGACAATTTGTCAACAAAAACTTTCCCCATTGGTTACCAAAACCAGAGAACGACCAAACTGGAAAACTACCCGTTTTCTTGGAAAACCACTTGCGGCCATCATTACAAAAACAAAACCCACCGTCGATTCCTTCCCCACTTTTCTTTTTCTATTTCTCTTCTTCTCTCTCGATTTTTCATCATCTTCTTTTTCTTCTTCTCATACCAATCCAATTCCTTCACTATGCGTATGAGCTGTAATGGATGCCGTGTTCTTCGTAAAGGTTGCAGTGAGAGCTGCTCCATCAGACCATGTCTTCAGTGGATCAAATCCCCTCAATCCCAAGCCAACGCCACTTTCTTTCTCGCCAAATTCTACGGCCGAGCTGGCCTCGTTAACCTTATCAATGCTGGCCCCGACCATCTCCGCCCAGCTATTTTCAAATCTTTGCTATTCGAAGCGTGTGGCCGGATCGTGAATCCCATTTTTGGGTCGGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTTTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCACCGATTCTGCCGGTTTCTTCTGAAACGGCAGCGTCGCACATGGGTCCACCTTTAAAAGGCTGTGATATCCGCCATGTTTCCAAACAGCAAGACTCAGCCTCCGGTTCAGCGGTTAGGAAGATCAAGACGCGACGGCGGTTCAAACGGTCTGGGACGGCGAAGTTGAAGCCGAAAGAGGAGCCGAGTGTGGTGGTGGTACCCGAGTTCAAATTTGATGACCAAACCCAGATTGTGTCGGAACCCCAGTGTTTGAAGTTTGAGTTGGATAATTGGAAGGGTCGTGAGTCGCCGGAGAAAGACTGCGGTAGCGACGATACAGAGTGCCTGTCGGTGGAGACTGTGGAGGGTTGCCAGGGTGGTGACGTGGAGTTGGAACTTACATTGGGGTTTGGGCAAAGTTGGATGCTGACGTGA 969 49.54 METNDNLSTKTFPIGYQNQRTTKLENYPFSWKTTCGHHYKNKTHRRFLPHFSFSISLLLSRFFIIFFFFFSYQSNSFTMRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQDSASGSAVRKIKTRRRFKRSGTAKLKPKEEPSVVVVPEFKFDDQTQIVSEPQCLKFELDNWKGRESPEKDCGSDDTECLSVETVEGCQGGDVELELTLGFGQSWMLT* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2368012 2369905 - CsaV3_1G003810.1 Csa01g00381 514878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00381 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 79 315 - -
Csa01g00381 322 Pfam Lateral organ boundaries (LOB) domain 82 180 IPR004883 -
Csa01g00381 322 ProSiteProfiles LOB domain profile. 81 187 IPR004883 -
Csa01g00381 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 79 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00381 Csa-Chr1:2368012 Csa06g03011 Csa-Chr6:25950641 6.20E-50 dispersed
Csa03g02065 Csa-Chr3:16836290 Csa01g00381 Csa-Chr1:2368012 1.99E-90 transposed
Csa01g00381 Csa-Chr1:2368012 Csa05g02614 Csa-Chr5:27325928 3.21E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30636 PF03195 LOB 1.10E-21 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00381 - - csv:101219232 616.69