Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00383 ATGCAATATTATTATTGTTGCTCTAAAGATGAAGATGATGATCAAGCTCTTCTTCTTAGCCTATTCTACAATCTCTCTTCTTCCTTCTTCCTTGTCTTCTTCTTCCTCTCCTTCACATCCATTTTACTTTTCAAGTCATTCTACTTCCTTGGTGCTCCTTTATTCCCAAGAAATGAGTATGAATATGAATACAACGCGGTGTCATCCAACCAGGAGGAGGAAGAAGAGGAAGAGGAAGAAAGATATGGTAGTGGAATCTATGGTACGTCGTTTCTCGATAAAGAAGCCGAAACTCGGATGAGTCGATGGCAAAGCCAGCTTCCAGATAATGAAGAAATATTATTAACAGATTTGGAGGAGCCTTGGATTACTATGGAATCCATAGACTTAGATGACCAAATTACAACCAATAGCTCAGTTTATGAGTCCCCACAAGCTGCCTTACAACTTGATGAACAATATCTACAAGAAAACGACCACGACGACCAAATGCCAGAAGAACTCACGGACTCCGAACAGGTCGTGAGACAAGTAATGAAGGTGAATTCTTGTAGAATATCAATGGACATGAAGAAGAAGAGATTGGTGGAGGATAATAATAAGGATCATAAAAGAAGAAATGATGATGATCAAATCAGTTATGGGATTAATTACATGAAGAAGGAGGAGGAATTATGTGGTGGAAAGATTGTTATTAAGGAGAATAACAACAATAATAATGAGAAATATTTGGTATTTAGACCAAATGAAATATTGGTTAATAAAAAAAAGAAAGAAGAAGAAGAAGATCAAGAGATATATGGGGATTCATATACAATAGGGTCAACATCAAAGAGTTCATCAGAATGGAGAAGCTCAATAAACTGCAGAGATTCATCATCAGGAACTGAAGATCCATTTTCATCTTCTTCAAGAAGAAGCTGTCCAAAATGGGAATCTTATACTGTTTTCCAGAAATATGATGAAGAAATGATGTTTCTTGATAGAATCACTGCCCAAAAGCTTCATGAAACAGAGTCATTGAGGTCAATTAAGATGTGCCCAAGATCAATATCAGAGAGGATTGTTTATAAATTATCAACAATAAACAAGAAAGGTTCAGAACATGTTAATGTGAAACAAAATCCATATCATGAATTGGAAAGTGCTTATGTTGCACAAATTTGCTTGACATGGGAAGCACTAAATTGGAATTACAAGAATTTTGTGAACAAGAAATTAAGCAGTAGTTGTAAATTAAGAGCAGAAATGGATAATGGCTGTCCAGGCAAAATTGCTCAACAGTTTCAACAATTTCAAGTTCTTCTTCAACGTTACATTGAGAATGAACCTTATGAACATGGCCGTCGCCCTGAGATTTATGCTCGTATGAGACTTTTGGCTCCTAATTTGCTTCAAGTCCCTGAATTCATAGATGAAGAAGAAATAAAGGAAGAAGGAGGTGGTTATGGTTCAAGAATATCCTCACCATCTTTTTTAATGATAATGGAAGATGGAATAAGAACATACATGAATTTCCTCAAAGCTGATAAAGAGAAACCTTGCCAGATTGTTGCTTCATTTTTCAAGAGAAAGAAAAGACCTTCGGTTGATCCAACTCTCCTCCAACTCATCAAGAAAGTTAACCAAAAAAAAAAGATGAAGCTTAAAGACCTTCGTCGTGCGGGGAAGTGTTTGAGAAAAAGGAAGCTAAGCGTAGAGGAGGAGATGGAGATTTTGATGGCTCTTATAGACCTAAAAGTGGTTTCTAGGGTTTTAAGAACTGCGGATTTAAGCGAACAACAACTCCATTGGTGTGAGGCAAAGTTGAGCAAAGTTAGGATTGTGGATGGAAAACTTCATAGAGATTCCACACCTCTTTTCTTTCCAGCTCATTGA 1878 36.63 MQYYYCCSKDEDDDQALLLSLFYNLSSSFFLVFFFLSFTSILLFKSFYFLGAPLFPRNEYEYEYNAVSSNQEEEEEEEEERYGSGIYGTSFLDKEAETRMSRWQSQLPDNEEILLTDLEEPWITMESIDLDDQITTNSSVYESPQAALQLDEQYLQENDHDDQMPEELTDSEQVVRQVMKVNSCRISMDMKKKRLVEDNNKDHKRRNDDDQISYGINYMKKEEELCGGKIVIKENNNNNNEKYLVFRPNEILVNKKKKEEEEDQEIYGDSYTIGSTSKSSSEWRSSINCRDSSSGTEDPFSSSSRRSCPKWESYTVFQKYDEEMMFLDRITAQKLHETESLRSIKMCPRSISERIVYKLSTINKKGSEHVNVKQNPYHELESAYVAQICLTWEALNWNYKNFVNKKLSSSCKLRAEMDNGCPGKIAQQFQQFQVLLQRYIENEPYEHGRRPEIYARMRLLAPNLLQVPEFIDEEEIKEEGGGYGSRISSPSFLMIMEDGIRTYMNFLKADKEKPCQIVASFFKRKKRPSVDPTLLQLIKKVNQKKKMKLKDLRRAGKCLRKRKLSVEEEMEILMALIDLKVVSRVLRTADLSEQQLHWCEAKLSKVRIVDGKLHRDSTPLFFPAH* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2377357 2381680 - CsaV3_1G003830.1 Csa01g00383 514880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00383 625 Coils Coil 57 77 - -
Csa01g00383 625 MobiDBLite consensus disorder prediction 257 307 - -
Csa01g00383 625 Pfam Protein of unknown function (DUF1666) 379 623 IPR012870 -
Csa01g00383 625 PANTHER DNA LIGASE (DUF1666)-RELATED 17 625 - -
Csa01g00383 625 PANTHER DNA LIGASE (DUF1666) 17 625 - -
Csa01g00383 625 MobiDBLite consensus disorder prediction 269 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00383 - - - csv:101203868 1111.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00383 Csa-Chr1:2377357 Csa07g02277 Csa-Chr7:21217822 5.84E-46 dispersed
Csa01g00383 Csa-Chr1:2377357 Csa03g03846 Csa-Chr3:33906970 2.05E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g322 . . . Bda15g00517 Bpe12g00690 . . . . . Cma10g00234 Cma11g00269 Car10g00220 Car11g00246 . . Cpe04g01405 . . . . . . . Cla06g01468 Cam06g1621 Cec06g1684 Cco06g1676 Clacu06g1586 Cmu06g1537 Cre06g2348 . . Cone13ag0283 . . . . . Blo13g00164 . . . . . . Bma08g00063 . Cmo10g00249 Cmo11g00275 . . . . . Cpe18g00758 . . . . . . . . . . . . . . Lsi06g01332 Csa01g00383 Chy02g02363 Cme02g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007469 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00383 Csa_Chr01 FPKM 22.231491 22.421389 15.204486 16.425375 11.786616 15.025238 15.236313 27.92119 27.620354 28.187252