Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00386 ATGAAGGCTCCGACTTTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGACTGAGGCGAATGGGGATGTCTATTAGAGAGCGGATTAATGTACCGAAAGCGGGGACTACACAGGCAGTGTTGGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTCCATGAGGAACTTGCGCATGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACTGGGGGATTGGTTCTATGGAGGTCTGGAAGTGTTATGGTTGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAATTAAACCCCTTACAAGGGATGGGGATGGGGTATTCATCCCAGATGTCTCTTCTGCTACCACTTCAACGAGTGACAATGTTGCAGCTTCAGTTCCAGAGAAGACTATGATGCCGATTGGGCCTCCTATGTCTAACGAGGGCTTGTCAGAGGAAGAAGCTGAATACAACCAACTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACGGGAGTGCTTCCTGTTGATGCCGATCAGCTTCCTCCAAGTATTCCGGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAACTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAATAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTCAAAAGAGGCATACAGAACACCAATAATAAACTCATGGCTGAGGAGATAGGGAACTTAACAGGAGGTGTGTTACTATTGAGGAATAAATATTTTATCGTCATATACCGTGGGAAGGATTTTCTCCCACCAAGTGTAGCTGTAGCTTTGACAGAAAGGCAGGAATTAACAAAACAGATTCAAGATGTGGAAGAGAAAGTTCGTAATAAAGTGGTCGAGGCAACTTCATTAAGCATTAATGGACAGGCACCTGCAGGTACCTTGGCCGAATTCTATGAGGCTCAGTCCAGATGGGGAAGGGAAATAACTGCTGAAGAGCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACACAAGCTAGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAAATTGCTATCTAAAATCGAAGCATCCATGATTCTTTCTAGCCCCGACGATGACCAGGAAACAATAACAGATGAGGAACGAGTCATGTTTCGGAGGGTTGGGTTACGAATGACCGCATATTTACCTATGGGCATTCGTGGTGTCTTTGATGGTGTTGTTGAAAACATGCATTTACACTGGAAGCATAGAGAGCTTGTGAAGTTAATTAGCAAGCAAAAAACACTTGCTTTTGTGGAAGAAACTGCAAGATTGTTGGAGTATGAGAGTGGTGGAATACTTGTTTCGATAGATAGAGTTCCAAAAGGGTATGCCCTTGTTTACTATCGTGGAAAGAATTATCGTCGACCCATTGCCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTGAAGCGTTCAGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCACATATCTGAACTCGAGCAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATGAGAATAAATTGTCGTCTCAGGATCGGCCTGTCTCAGAATCTTTCCAAGACAAGGAAGCATATTTGTCTGCTGTTTCAGATGTTGACAATGATGAAGATAGCAATGATGAAGACAGTGAATACGAAGAGGATGAAGATGACGATTTTGATTTTTCCGACTCAGAAAGCACTGACGATCCACTGAACTAG 1881 43.49 MKAPTLAELTIEDEELRRLRRMGMSIRERINVPKAGTTQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKIKPLTRDGDGVFIPDVSSATTSTSDNVAASVPEKTMMPIGPPMSNEGLSEEEAEYNQLLDGLGPRFVEWWGTGVLPVDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIGNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALTERQELTKQIQDVEEKVRNKVVEATSLSINGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITDEERVMFRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEQNIEQMKKEIGVTEDSDDENKLSSQDRPVSESFQDKEAYLSAVSDVDNDEDSNDEDSEYEEDEDDDFDFSDSESTDDPLN* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2392644 2396031 - CsaV3_1G003860.1 Csa01g00386 514883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00386 626 ProSiteProfiles CRM domain profile. 415 515 IPR001890 GO:0003723
Csa01g00386 626 MobiDBLite consensus disorder prediction 557 626 - -
Csa01g00386 626 SUPERFAMILY YhbY-like 416 514 IPR035920 -
Csa01g00386 626 MobiDBLite consensus disorder prediction 557 579 - -
Csa01g00386 626 SUPERFAMILY YhbY-like 207 299 IPR035920 -
Csa01g00386 626 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 617 - -
Csa01g00386 626 SMART CRS1_YhbY_2 417 504 IPR001890 GO:0003723
Csa01g00386 626 SMART CRS1_YhbY_2 11 94 IPR001890 GO:0003723
Csa01g00386 626 SMART CRS1_YhbY_2 207 291 IPR001890 GO:0003723
Csa01g00386 626 Pfam CRS1 / YhbY (CRM) domain 207 291 IPR001890 GO:0003723
Csa01g00386 626 Pfam CRS1 / YhbY (CRM) domain 12 94 IPR001890 GO:0003723
Csa01g00386 626 Pfam CRS1 / YhbY (CRM) domain 418 504 IPR001890 GO:0003723
Csa01g00386 626 ProSiteProfiles CRM domain profile. 205 302 IPR001890 GO:0003723
Csa01g00386 626 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 617 IPR045278 GO:0000375|GO:0003729
Csa01g00386 626 Coils Coil 528 562 - -
Csa01g00386 626 Coils Coil 300 327 - -
Csa01g00386 626 MobiDBLite consensus disorder prediction 593 626 - -
Csa01g00386 626 ProSiteProfiles CRM domain profile. 9 105 IPR001890 GO:0003723
Csa01g00386 626 SUPERFAMILY YhbY-like 10 104 IPR035920 -
Csa01g00386 626 Gene3D - 416 516 IPR035920 -
Csa01g00386 626 Gene3D - 206 298 IPR035920 -
Csa01g00386 626 Gene3D - 9 106 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00386 - - - csv:101219948 1172.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00386 Csa-Chr1:2392644 Csa03g01261 Csa-Chr3:9646176 1.34E-176 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00386 Csa_Chr01 FPKM 12.514209 14.958985 50.479713 52.145927 377.744141 353.528076 376.813293 32.045723 33.007252 30.863213