Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g00387 | ATGAGGCAGTTAACTGGAAGGATAAAGGAAATGAAGCGTTTCGGGATCAATGTTGAAGGAACTGTTGTGGTTTTGCGTCATGCTGCTTTGGAAAAGCCTTTTCTTCCATATTTGGTTCCTCTGTTTTTTCTGGCTTGGGCTTTCGATAAATGGGTTTTTTCTTTCTCTAATTGGATTCCGCTTGCTATTGCCGTGTGGGCGACTTTACAGTATGGGAGGTTTCAACGTCAACTACTAGTAGAGGAGTTGAACAAGAAATGGAAGCAAATTGTACTAGACACCTCGCCCAGTACACCACTTGAGCACTGTGAATGGTTAAATAAGCTGTTGACGGAGATTTGGCCTAACTACATCAACCCAAAACTTTCATTGAAGTTCTCTACTATTGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAATTGTTGGAGTTTTCTTTAGGCTCATGTCCTCCTGGCTTGGGTCTTCGTGGGACTCAATGGTCAACTTCTGGTAATCAGAGAATCATGCGCTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTAATCAATAGCATTCACATAATGGGTGATCTTCTCCTGAGGCCAATCTTGGATGGGAGAGCAATTTTGTATTCATTTGTTTTCACTCCAGAAGTGAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTACCTGCAACTGAGCTGCCGGGCGTTTCCTCTTGGCTGGTTAAACTTCTAACAGATTTTATAGTAAGGACAATGGTTGAACCTCGGCGCCGCTGTTTCTCATTGCCAGCTGTTGATCTGGGCAAAAAGGCTGTTAGTGGTACAATATATGTGACAGTCATCTCAGCCAGCAAGCTTTCCAGAAACAGCTTGAGAGGAAACTCTTCCAGGAAACCACTGAGTACTTATATGAATAGTCCACTAGACGAAAACTTAATTGATAAGGATGATTTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTGCTGTAAGATTAGGCTCCAACCCTGTATGGAATTCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATTTATATGAGTCAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCTACATCATTTTGGGCAATAGGATCTGACTCTGAAGTGATTGCAAAGCACAGTGAGTTTTGTGGAAAAGAGGTCGAAATGGTTGTCCCATTTGAAGGAGTCGATTGTGGGGAGTTAACAGTGAAGCTTATTGTTAAAGAGTGGCAATTTTCTGATGGTTCACATAGCTCGCATAATTTTCAAGTTAGACCTCAACAATCAGTTAATGGATCTTCAAACTTTGCTTCAAGAACTGGAAGGAAGATGGCTATTACCCTTGTAGAAGGAAAAGATCTTAGTTTGAAGGATAAATCTGGGAAGTGTGAGTCATATGTAAAATTGGAATATGGGAAGGCTCTCCTGAAAACAAGAACTGGTATTTCTGTAAATCCTAATTGGAATCAGAAGTTTGAGCTTGATGAGATTGGAGGTGGTGAATACCTCAAGGTAAAATGCTTTGGTGTAGATATATTCGGCGACGAAAATATCGGTACTGCCCGAGTTAATTTGGAAGGACTTCATGAAGGAGTAGTCAGGGATGTATGGGTCCCCCTCGAAAAAGTAAATTCTGGAGAACTAAGGCTAATGATAGAGGCAGTCAAGGCAGATGACTATGAAGGATCAAGGGGTTCAAACATAGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCTTATGTAAGAGTACAATATGGAAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTGCTACCCACATCAAGCATAGGTGACTGTGTTGTCGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTTAAACGAGGAGAGATCCACGTCCAAATCACAAGAAAAGTTCCAGATCTAGAGAAAGAGAGAAGACTTAGTTTAGAACCCTCCTCGGATTCTGAATCATCTGTCACCAAGGCACATCAAGTTTCAAGTCAGATGAAGCAGACAATCAGCAAGTTTCATGCTTTAATCGAGGAGGCTAATCTCGACGGTCTTTCGGCACCATTGAATGAACTAGAAAGACTGGAGGAACTGCAAGAGGAATATATATTACAACTTGAAACTGAACAAATGCTTCTTATAAGTAAGGTTTCCATGATTGTAAATTTCTGCACAGTTTTAAGGTTGGCTGGGGAATAA | 2499 | 41.1 | MRQLTGRIKEMKRFGINVEGTVVVLRHAALEKPFLPYLVPLFFLAWAFDKWVFSFSNWIPLAIAVWATLQYGRFQRQLLVEELNKKWKQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKFSTIVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIMGDLLLRPILDGRAILYSFVFTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFSLPAVDLGKKAVSGTIYVTVISASKLSRNSLRGNSSRKPLSTYMNSPLDENLIDKDDLQTFVEVELDELSRRTAVRLGSNPVWNSTFNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDSTSFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFQVRPQQSVNGSSNFASRTGRKMAITLVEGKDLSLKDKSGKCESYVKLEYGKALLKTRTGISVNPNWNQKFELDEIGGGEYLKVKCFGVDIFGDENIGTARVNLEGLHEGVVRDVWVPLEKVNSGELRLMIEAVKADDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKVPDLEKERRLSLEPSSDSESSVTKAHQVSSQMKQTISKFHALIEEANLDGLSAPLNELERLEELQEEYILQLETEQMLLISKVSMIVNFCTVLRLAGE* | 833 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2397832 | 2405260 | - | CsaV3_1G003870.1 | Csa01g00387 | 514884 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g00387 | 832 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 491 | 602 | IPR035892 | - | |
| Csa01g00387 | 832 | ProSiteProfiles | C2 domain profile. | 472 | 586 | IPR000008 | - | |
| Csa01g00387 | 832 | CDD | C2 | 494 | 588 | - | - | |
| Csa01g00387 | 832 | PANTHER | OS01G0128800 PROTEIN | 12 | 818 | - | - | |
| Csa01g00387 | 832 | Gene3D | C2 domain | 295 | 441 | IPR035892 | - | |
| Csa01g00387 | 832 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 617 | 732 | IPR035892 | - | |
| Csa01g00387 | 832 | Coils | Coil | 789 | 812 | - | - | |
| Csa01g00387 | 832 | MobiDBLite | consensus disorder prediction | 740 | 759 | - | - | |
| Csa01g00387 | 832 | Gene3D | C2 domain | 471 | 605 | IPR035892 | - | |
| Csa01g00387 | 832 | Gene3D | C2 domain | 610 | 734 | IPR035892 | - | |
| Csa01g00387 | 832 | ProSiteProfiles | C2 domain profile. | 276 | 416 | IPR000008 | - | |
| Csa01g00387 | 832 | ProSiteProfiles | C2 domain profile. | 604 | 717 | IPR000008 | - | |
| Csa01g00387 | 832 | SMART | C2_3c | 297 | 415 | IPR000008 | - | |
| Csa01g00387 | 832 | SMART | C2_3c | 622 | 716 | IPR000008 | - | |
| Csa01g00387 | 832 | SMART | C2_3c | 491 | 585 | IPR000008 | - | |
| Csa01g00387 | 832 | ProSiteProfiles | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 99 | 285 | IPR031468 | GO:0008289 | |
| Csa01g00387 | 832 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 290 | 406 | IPR035892 | - | |
| Csa01g00387 | 832 | Pfam | C2 domain | 296 | 405 | IPR000008 | - | |
| Csa01g00387 | 832 | Pfam | C2 domain | 492 | 588 | IPR000008 | - | |
| Csa01g00387 | 832 | Pfam | C2 domain | 623 | 719 | IPR000008 | - | |
| Csa01g00387 | 832 | CDD | C2 | 623 | 719 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g00387 | - | - | - | csv:101204113 | 1574.68 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa01g00664 | Csa01g00387 | CCT | |
| Csa01g00664 | Csa01g00387 | ECH | |
| Csa01g00387 | Csa01g00664 | ECH |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g00387 | Csa-Chr1:2397832 | Csa03g04318 | Csa-Chr3:37775648 | 5.32E-07 | dispersed | |
| Csa01g00881 | Csa-Chr1:5498721 | Csa01g00387 | Csa-Chr1:2397832 | 3.02E-09 | transposed | |
| Csa01g00387 | Csa-Chr1:2397832 | Csa01g00664 | Csa-Chr1:4263073 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g316 | Blo04g00823 | . | Bda06g00806 | . | . | . | . | . | Cmo13g01065 | Cmo18g00035 | . | Cma11g00273 | Car10g00217 | Car11g00249 | . | Cpe20g00121 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone13ag0280 | . | Lsi02g00181 | Csa01g00664 | Chy12g01439 | Cme12g01877 | . | Blo15g00070 | . | Bda14g00929 | . | Bpe15g00523 | Bma03g00894 | . | Sed08g2181 | Cmo10g00245 | Cmo11g00278 | Cma13g01024 | Cma18g00042 | Car13g00859 | Car18g00036 | Cpe09g01138 | . | Bhi08g01232 | Tan05g2269 | Cmetu12g1130 | Lac10g0236 | Hepe07g2393 | . | . | Cla04g01093 | Cam04g1144 | Cec01g1654 | Cco01g1703 | Clacu04g1172 | Cmu04g1153 | Cre01g1448 | . | Csa01g00387 | . | Cme02g01738 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0002821 | 1 | 3 | 2 | 1 | 1 | 1 | 4 | 1 | 2 | 1 | 1 | 2 | 3 | 2 | 2 | 3 | 2 | 1 | 2 | 1 | 2 | 2 | 2 | 2 | 2 | 1 | 2 | 3 | 2 | 2 | 56 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Csa01g00387 | Csa_Chr01 | FPKM | 239.894211 | 260.308655 | 339.863434 | 348.474731 | 255.325577 | 259.492035 | 261.550751 | 2559.811279 | 2495.727295 | 2557.229736 |