Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00389 ATGGCTGTACTCAGCAAAACCAGAAGCACGCTTGAGGGGCTTGTTAGAGATAGTTCATTGAAATGGTTGTTAGGAAAGCGAAGCTTTTTTGATGAAGAACTTGAAGAAATGGAAAGGTCTCCTTCTGCTCAGAGAAATTGGATAAGTGAGCTCTCTCCATTTGCCAATCTGGTTGTTCGGAGATGTACAAAACTCCTTGGTGTTTCTGCCAGCGAACTTCAACAAAATTTTAATATGGAGGCCATTGATTCAATAAAGGTTCCTTCAAATTATGCAAGAAACTTTCTGGAGTATTGCTGTTTCAGGGCACTTGCACTATGTACTCAAAATACGGGCTATCTGGCCGATAAAAAGTTTCGACGCTTGACATTTGACGTGATGATAGCTTGGGAAGCCCCGGCAAGTTCTAGCCGGCCTTTACTTAATATTGATGAAGATGCATCAGTTGGGGTTGAGGCTTTCTGTCGAATTGCTCCAGCTGTTCCCATAATTTCAAATGTCATTGTTAGTGAAAATCTTTTTGTGGTGCTTACTTCATCAGCTAGTTCTAGACTTCAGTTTTCTGTTTACGACAAGTACCTGAGCGCGCTAGAAAAAGTGATAAGAAAAATGAAAAACCTATCAGAGTCAAACCTTCTCCAGTCTGAAAGATCATTAAGAGATGAAAAGATTTTAGAAATGGATGGAACAGTCACAACACAACCAGTTCTTGAACATGTAGGAGTTTCTACTTGGCCGGGTAGGTTGGTTCTGACAGATCATGCACTTTACTTTGAAGCTCTTCGTGTGGTGTCATTTGACAAGGCAAAAAGATATGACTTATCTGATGATCTAAAACAGGTTGTCAAACCTGAATTAACTGGACCATGGGGCACCCGGCTCTTTGACAAGGCGGTTCTGTATAAATCCATGTCCTTATCAGAACCAGTTGTGATCGAGTTTCCTGAACTTAAAGGCCATACCCGTCGAGATTTTTGGCTGGCAATCATCCGTGAGGTTTTATATGTTCATAGATTTATCAACAACTTCCAGATCAAGGGAATTCAAAGGAGCGAAGCTCTCTCAAAAGCTGTCCTTGGGATTCTACGTTTACAAGCCATTCAAGATATATATTCTACACCACCTCTTGGGTGTGAGTCGCTTCTCATGTTTAACCTTTGCGATCAGCTACCCGGTGGGGACTTAATATTGGAAACCCTTGCAAATATGTCGGACATGAAGGAGTGTGACCGGACAAACAGATCCAGTCTTGTAAAGGGAATGTATTCAATTTCAGCACTTGACTTAGTTTCTCACTTGGGATTTGGAATGGGAATGACTTTAAGCGATTCCAATGAAAATGAACTTCTTGTGGGTGAGATTGCTGTCGGAAAAATGACTCCTTTGGAAAGGGCAGTCAAGGAATCAAGAAACAATTATGAAAAAGTGGTGATGGCTCAAGAGACAGTCGATGGAGCAAAAGTAGATGGCATTGATACTAATTTGGCAGTGATGAAGGAACTAATGCTGCCAGTGAGTGAACTTGGGAAGTTCCTTCTTTCTTTGGCACTATGGGAAGATCCTATTAAGTCTTTGGCATTCTGTTTGGTCTCCAGTTACATTATCTACAGGGATTGGCTGCTCTACGCCATTGCTCTGCTACTTGCATTCATGGCCATCTTCATGATGCTAACGCGAATTTTCAACCAAGGTACCCCAGTCGATGAAGTTAAGGTCGTAGCTCCTCCAGCAATGAATGCAATGGAGCAGCTTTTGGCCGTCCAGAATGCGATTTCTCAAGCGGAACAGTTCATCCAAGATGGAAACATCTTTCTCCTCAAGCTGCGCGCTTTGTTTCTGGCCATTTTCCCTCAGGCCACAATGAAGTTTGCAGTTTTCCTTATAGTGATGGCCTTGACTCTAGCCTTCTTACCCACAAAATACATAGTTCTAATGGTGTTTTTGGAGGGGTTTACAAGGTACTCACCACCAAGAAAACCAAGCACAGAGAGATGGACAAGAAGAGTAAGGGAATGGTGGTTCAGCATTCCAGCAGCTCCTGTAATTCTGGAGAGGGAAAAGGAAGACAAGAAGAAGAAATGA 2082 42.36 MAVLSKTRSTLEGLVRDSSLKWLLGKRSFFDEELEEMERSPSAQRNWISELSPFANLVVRRCTKLLGVSASELQQNFNMEAIDSIKVPSNYARNFLEYCCFRALALCTQNTGYLADKKFRRLTFDVMIAWEAPASSSRPLLNIDEDASVGVEAFCRIAPAVPIISNVIVSENLFVVLTSSASSRLQFSVYDKYLSALEKVIRKMKNLSESNLLQSERSLRDEKILEMDGTVTTQPVLEHVGVSTWPGRLVLTDHALYFEALRVVSFDKAKRYDLSDDLKQVVKPELTGPWGTRLFDKAVLYKSMSLSEPVVIEFPELKGHTRRDFWLAIIREVLYVHRFINNFQIKGIQRSEALSKAVLGILRLQAIQDIYSTPPLGCESLLMFNLCDQLPGGDLILETLANMSDMKECDRTNRSSLVKGMYSISALDLVSHLGFGMGMTLSDSNENELLVGEIAVGKMTPLERAVKESRNNYEKVVMAQETVDGAKVDGIDTNLAVMKELMLPVSELGKFLLSLALWEDPIKSLAFCLVSSYIIYRDWLLYAIALLLAFMAIFMMLTRIFNQGTPVDEVKVVAPPAMNAMEQLLAVQNAISQAEQFIQDGNIFLLKLRALFLAIFPQATMKFAVFLIVMALTLAFLPTKYIVLMVFLEGFTRYSPPRKPSTERWTRRVREWWFSIPAAPVILEREKEDKKKK* 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2412851 2416403 - CsaV3_1G003890.1 Csa01g00389 514886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00389 693 Coils Coil 190 210 - -
Csa01g00389 693 Pfam Plant protein of unknown function (DUF639) 459 686 IPR006927 -
Csa01g00389 693 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639) 1 693 - -
Csa01g00389 693 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED 1 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00389 - - - csv:101213898 1311.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00389 Csa-Chr1:2412851 Csa05g01472 Csa-Chr5:16616154 1.99E-169 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g315 . . Bda06g00807 Bda15g00515 Bpe12g00692 . . Bma12g01232 . . Cma10g00231 Cma11g00277 Car10g00216 Car11g00252 . . Cpe04g01401 . . . . . . . Cla06g01464 Cam06g1617 Cec06g1679 Cco06g1672 Clacu06g1581 Cmu06g1532 Cre06g2344 . . . . . . . . Blo13g00167 Blo15g00069 . . Bpe07g01036 . . Bma08g00061 . . Cmo11g00281 . . . . . Cpe18g00761 . . . . . . . . . . . . . . Lsi06g01327 Csa01g00389 Chy02g02358 Cme02g01736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004253 3 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 4 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00389 Csa_Chr01 FPKM 0.939815 0.0 0.0 0.0 0.0 0.0 0.803246 0.0 0.0 1.081184