Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00391 ATGGCTGATCATGATTTCCCTTCCTCCTTCCCTCTTGAAGATCCAAATTTAGAACTCATGGCTTCTCATTTCTCCTCTTCAATTCCCAATTTCACTCACTTTTTGCCATTCTCCACCACTAATACAGAAATATTTTCACAATTTCCTCCAAATTTCCCAGAAAATAATGCTACTTCTTTTACTACTTCCCCTGTTTTGCCTTCTCACTCTGTTTTCCCACCTGCTCCAACTCCCTCCGTTTCTACTACTACTCATCACCACTTCCATGATATCAATAACAAGAGAAAATCTATGCCTATGGATGTTTCCGAAAGTACTTCTGGGATTTCCACTCCTCAAGTTTCTGAATCTGGCTTCAACACTAAATATAGCTCTGGGAAAGGGAAGAGGTTGAAAAGCTTAGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTAATGTTGGATGAGATAATTAACTATGTTCAGTCTCTACAGAATCAAGTGGAGTTCCTATCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTCAACTCAGAGGCAGATGCAATATCAAAATTACAAAGGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAAGGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATTTGCCTCTTTGA 798 40.48 MADHDFPSSFPLEDPNLELMASHFSSSIPNFTHFLPFSTTNTEIFSQFPPNFPENNATSFTTSPVLPSHSVFPPAPTPSVSTTTHHHFHDINNKRKSMPMDVSESTSGISTPQVSESGFNTKYSSGKGKRLKSLEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADAISKLQRAKAHEAKELERLMKEGYGGIACFHSNLPL* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2423148 2424832 - CsaV3_1G003910.1 Csa01g00391 514888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00391 265 PANTHER TRANSCRIPTION FACTOR BEE 1 8 264 - -
Csa01g00391 265 CDD bHLH_AtBPE_like 144 229 - -
Csa01g00391 265 Coils Coil 231 251 - -
Csa01g00391 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 8 264 IPR024097 GO:0006355
Csa01g00391 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 222 IPR036638 GO:0046983
Csa01g00391 265 SMART finulus 160 210 IPR011598 GO:0046983
Csa01g00391 265 Coils Coil 131 151 - -
Csa01g00391 265 MobiDBLite consensus disorder prediction 128 160 - -
Csa01g00391 265 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
Csa01g00391 265 MobiDBLite consensus disorder prediction 97 160 - -
Csa01g00391 265 Gene3D - 149 222 IPR036638 GO:0046983
Csa01g00391 265 MobiDBLite consensus disorder prediction 98 127 - -
Csa01g00391 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00665 Csa01g00391 CCT
Csa01g00665 Csa01g00391 ECH
Csa01g00391 Csa01g00665 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00391 Csa-Chr1:2423148 Csa05g01353 Csa-Chr5:14293739 5.79E-37 dispersed
Csa03g02075 Csa-Chr3:16961726 Csa01g00391 Csa-Chr1:2423148 1.11E-46 transposed
Csa01g00391 Csa-Chr1:2423148 Csa01g00665 Csa-Chr1:4277323 1.74E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30638 PF00010 HLH 4.50E-05 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00391 - - csv:101209353 494.967