Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00396 ATGGCGACGCCGTTGACAGGGCTACACCATAGGGACGGTGGCGGAGGAGTGGCTTTTTTGGCTAATTCTGTAAATAAAATGGATTCCGCTTCGTCTCCGTCCTCGCCTAATGATTGTTTGAGGAGTTCTCAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCAATTCGTAATGAGCTTGATACGCTTCACCGGTTGGCTATGGCGTTTGCCACCGGGCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTCATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCATATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAAGCATCTCTTGTTTGGCAGTTCTTTTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCATCTGATGAATTTCAGGATCTACAGAAATGTTTAATTAAAGTAGTCCCTGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGATGGAAGCGAGAAGTTGTGGCGATGTATCAACAAGTTGTTTTGGTGATTCTCTAGTTGACTATCATACAGATCCTACTACTGATACATCAAATCATCAAACCGAAAATGTAAATTGTGCTTGTGCATTGACGAGCCCTGGAAAAAGAAAATACGTAGAGTCAAGTGATGATATATCGGATTATGCGGTAACTCATCCAATCAATGAAATACTGTTCTGGCACAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAAGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAGCATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAGTTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAAAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGGCAACGGGAATTGTTATATCAAAGTTTGTGCATGATGCCTTTGAAATTGATTGAACGTGTCCTGCCCTGGTTGGTAGGATCGGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACGCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACCGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTGGCTGCAAGGGAAGGTTCAAAATCAGATAACGAAACTAATGCTAATGTCAAGAGGCTCACCATACGAAATGTACCATTGCCATGTGGAAGCTGTGATGGCCGTATTGCTTCAGAGACTGTTAATGTCCAGAAACAGTGTTGTAGTGATCAGTCCTGCCGTGTTCCAGCTTTGGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGAGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTCTCATGGGAAACAGATTGTGGCTCTTCTGATGTTGGGTCTGCAGGACGTCCAATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTGGAATCTGGAAAACTTAGTGATTGTGATGGAACATTTCTCCGGCCATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCACATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCATATACACTAGACCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCGTGTGTTCTGTCTGAGATTTCAGTCCTCCATGAAAGTTTGCATGAGGTACCGTTGGATGGGAGTTTTTCCAGAAGTGTTGTTGGGTCCGTTAATATGGTGGGGGAGGATTGTAATAGAAAGTACAATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATATAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGAAAACACTTCTCCGTGGAAGAGCAAGACAAAATAGTTGGCCGTATCATTGGAACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACCCAGGACGAACAGAATACTTTGATGGATACATGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGGCTGCTTCGTCTACCATAAATGGTGAAACATTGGAAGCTTGTGTTGCTCAAAAAGATTCTGGGCTGATTGAGAGCTTGGACCAAAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTCCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTTCAGAATCTTATGACCAGTCGCTGGATTGCTGCGCAGCAGAAATTACCTCAAGCAAATATAGAAGATAATTCCAATGGTGAAGATGTAACAGGACGAACGGCATCTTTTCGCTGTGCGGAGAAAAAAGAGTTCGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTGTTTACCTGTCGATTCTGTCATGACAATGTCAGCGACCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGCCTAACTATCCAACCAGTTGGGTCAATATGCACAACCCCTTCTTGCAATGGATTGTCAATGGCGAAATACTATTGTAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGGATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGCTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCACTACCTTGTGGTCATTACATGCATTCAGCCTGCTTTCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCTTTGTTGGCTGCTGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGCGAGCGGAAAGGCACATCACGATTCCATTGGTTATATCATAAATGTGGGTTTTGTGGATCATACAACAGTCGGGTAATCAAGAATGATACCACAATTGCTGACTGCCCCTCTTCCAATCAGTAA 3771 42.06 MATPLTGLHHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSQPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSSDEFQDLQKCLIKVVPEEKLLQQVIFTWMEARSCGDVSTSCFGDSLVDYHTDPTTDTSNHQTENVNCACALTSPGKRKYVESSDDISDYAVTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALAAREGSKSDNETNANVKRLTIRNVPLPCGSCDGRIASETVNVQKQCCSDQSCRVPALGVNIKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCGSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRPFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISVLHESLHEVPLDGSFSRSVVGSVNMVGEDCNRKYNELATKLQGMCKSIRVTLDQHIYREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGAASSTINGETLEACVAQKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDNSNGEDVTGRTASFRCAEKKEFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGSICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNSRVIKNDTTIADCPSSNQ* 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2454211 2464204 - CsaV3_1G003960.1 Csa01g00396 514893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00396 1256 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270
Csa01g00396 1256 CDD Hr-like 51 177 - -
Csa01g00396 1256 SUPERFAMILY RING/U-box 1135 1181 - -
Csa01g00396 1256 Gene3D nmb1532 protein domain like 46 196 - -
Csa01g00396 1256 Gene3D nmb1532 protein domain like 311 459 - -
Csa01g00396 1256 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Csa01g00396 1256 Pfam CHY zinc finger 1007 1082 IPR008913 GO:0008270
Csa01g00396 1256 PANTHER CHY ZINC FINGER PROTEIN 30 1252 - -
Csa01g00396 1256 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Csa01g00396 1256 Pfam Hemerythrin HHE cation binding domain 309 443 IPR012312 -
Csa01g00396 1256 Pfam Hemerythrin HHE cation binding domain 660 823 IPR012312 -
Csa01g00396 1256 Gene3D nmb1532 protein domain like 655 886 - -
Csa01g00396 1256 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270
Csa01g00396 1256 CDD Hr-like 662 822 - -
Csa01g00396 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Csa01g00396 1256 SMART ring_2 1136 1177 IPR001841 -
Csa01g00396 1256 Pfam Zinc-ribbon 1183 1239 IPR039512 -
Csa01g00396 1256 CDD RING-H2_Pirh2 1135 1178 - -
Csa01g00396 1256 Gene3D - 1207 1250 - -
Csa01g00396 1256 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Csa01g00396 1256 CDD Hr-like 313 441 - -
Csa01g00396 1256 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Csa01g00396 1256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00396 Csa-Chr1:2454211 Csa03g01422 Csa-Chr3:10652316 1.26E-52 dispersed
Csa01g00206 Csa-Chr1:1326160 Csa01g00396 Csa-Chr1:2454211 1.22E-16 transposed
Csa01g00396 Csa-Chr1:2454211 Csa05g02629 Csa-Chr5:27419065 2.59E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00396 K16276 - csv:101215023 2564.64