Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00398 ATGGCTTCCAAACTTCAAGTCCTCTTCAAACCAACTCTTGTTTGTCTCTTTACACTCATCTTCTCAACCTCAGCTTCTGTAACATTCAAGGACTGTGAGCCAAGAAATTGTGGACATGGCCCTGTTATAGAATACCCCTTTTGGATTGATGGTGTGCAAGATTCTTCCTGTGGATACCCAGATTTCAAAATCAAATGCTCCAGAGATTACCCTGTTCTTGAGATTTCCGATGACATTTTTATCGTCGAGGACATTTTTCACCAAACCAAATCGTTTTTACTGGTGAGTGCCGCAGCTTACGACGATCCACATTCATGTCCCTCTCCCTCTCATGGCATTCGTCTAGATGGAAAGCCATTCCATTTTAGTTCAGAGAATGAAAATTTCTCCTTCTTCTATGATTGTCCAAAAGTGTACAAAGATTACATCTATGAACTTAGCTGTACTAACAACACAACCCACTTTTCTTTTGCTACTTTCCACAAGGATCTTCTGGAGTTTCAGAATTTTCCCTTACAGTCGTGTCGTTCTTCGGTTCATGTTCCTATTCGCAAGAACTTGACTGCTAGTGTAGCTGATTTGAGGGAAATGAGTTATGTTGAGATTTGGAAAAGGGGTTTTTTCCTGAATTGGAATGCACAAGATTGCAGCAAATGTGAGCAAAGTGGTGGTTATTGTAGATTGGAAAACAATAAGTTTGCTTGTTCTTGTAGCGATGGACTTCATTCCAATAGCTGCAAACATGGAAATAGGACTAGAACAAAGATTATCATCGGGGTATGCAGTGGTGTTGGAGCTTTGCTTTTAACCTTTCTTGTTCTTGTAATCTGCTACCGATGGCGTCAGCTTCGTCGTAGAAGGTCTCATGCGTTGCCGTATGTGCAACGAAGCATTTCATTGAATCCGTCGAATCCGTCGAATCCCCCAAATCCGTCTTCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAGCTTGAAGAAGCCACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGCTTTGGCACTGTGTATTTTGGTTTACTAAAGGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTTGAGAGTAATTTTAAGAGAGTTGAGCAGTTCATGAATGAGGTAGAGATCCTTGCTCGCTTGCGTCACCGCAACCTTGTTTCGCTTTACGGTTGCACCTCGCGCAGTAGCCGTGAGCTTCTGCTTGTGTACGAATACGTCCCAAATGGCACGGTGGCTGATCACCTCCATGGAAAACTAGCAAAGTCTGGCAAGCTTCCATGGTGTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGAGATGTCAAAACCAACAACATTCTCCTCGACAACAACTACTGCGTTAAAGTAGCCGATTTCGGATTGTCCCGTCTCTTCCCACTCGATGTAACACACGTTTCAACCGCTCCACAAGGCACTCCTGGCTATGTCGATCCAGAGTACCATCAGTGCTACCAACTCTCTGACAAAAGTGACGTCTTCAGCTTCGGTGTGGTACTTGTTGAACTGATATCCTCAATGCCTGCTGTTGACATCACAAGGCATAGACAAGAGATCAACCTGTTCAACATGGCCATCAACAAGATCCAAAACAGCACACTACACGAATTCGTCGACCCATCACTCGGTTTCGAATCGGACTACAAAATCCAAGAGATGATAACCAGCGTAGCCGAGTTGGCGTTTCGATGCCTGCAAAGTATGAAAGACGAGAGACCAACAATGATGGAAGTTCTCGACACTCTTAACATCATAAAGAAACAAAACGCCGAGAAGGTGACAGATCGAGAGGCCGACATTTCAGACGATGCTGTATTGCTAAAGAATGGCTATGGATCGTCTCCAAGTTCCATGTCTGTATCTTGGGTTAGCAGTAACACCTCAACAGCAACAAATGAAACCATCAGCTCTTAA 2007 44.0 MASKLQVLFKPTLVCLFTLIFSTSASVTFKDCEPRNCGHGPVIEYPFWIDGVQDSSCGYPDFKIKCSRDYPVLEISDDIFIVEDIFHQTKSFLLVSAAAYDDPHSCPSPSHGIRLDGKPFHFSSENENFSFFYDCPKVYKDYIYELSCTNNTTHFSFATFHKDLLEFQNFPLQSCRSSVHVPIRKNLTASVADLREMSYVEIWKRGFFLNWNAQDCSKCEQSGGYCRLENNKFACSCSDGLHSNSCKHGNRTRTKIIIGVCSGVGALLLTFLVLVICYRWRQLRRRRSHALPYVQRSISLNPSNPSNPPNPSSVEEVENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVYFGLLKDGRAVAVKRLFESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRSSRELLLVYEYVPNGTVADHLHGKLAKSGKLPWCTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQNSTLHEFVDPSLGFESDYKIQEMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIKKQNAEKVTDREADISDDAVLLKNGYGSSPSSMSVSWVSSNTSTATNETISS* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2483778 2486198 - CsaV3_1G003980.1 Csa01g00398 514895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00398 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Csa01g00398 668 Gene3D Phosphorylase Kinase; domain 1 314 417 - -
Csa01g00398 668 SUPERFAMILY Protein kinase-like (PK-like) 326 624 IPR011009 -
Csa01g00398 668 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 656 IPR044652 -
Csa01g00398 668 MobiDBLite consensus disorder prediction 642 668 - -
Csa01g00398 668 Pfam Wall-associated receptor kinase C-terminal 165 240 IPR032872 -
Csa01g00398 668 SMART serkin_6 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00398 668 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00398 668 Pfam Protein kinase domain 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00398 668 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Csa01g00398 668 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Csa01g00398 668 Gene3D Transferase(Phosphotransferase) domain 1 418 640 - -
Csa01g00398 668 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 13 656 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00680 Csa01g00398 CCT
Csa01g00398 Csa01g00680 ECH
Csa01g00680 Csa01g00398 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00398 Csa-Chr1:2483778 Csa04g01858 Csa-Chr4:18320320 5.23E-175 dispersed
Csa01g00683 Csa-Chr1:4362771 Csa01g00398 Csa-Chr1:2483778 1.21E-13 dispersed
Csa01g00688 Csa-Chr1:4372170 Csa01g00398 Csa-Chr1:2483778 4.48E-08 dispersed
Csa05g02395 Csa-Chr5:26098077 Csa01g00398 Csa-Chr1:2483778 2.75E-89 transposed
Csa01g00398 Csa-Chr1:2483778 Csa01g00680 Csa-Chr1:4352931 1.28E-175 wgd
Csa01g00398 Csa-Chr1:2483778 Csa05g02634 Csa-Chr5:27440239 5.36E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77739 PF00069 Pkinase 7.20E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00398 - - cmo:103494139 1217.99