Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00402 ATGAAATGGATTCTTTTGAGAAACCTTCCTCTCAGAGCTCGGAATCATCTTCTTCTTCGTTCTCCCATTTACACATCCAATGCCCATCCTTCATTCTTCCTCTCACCCCCGGCCATCTCTCGCTTCAGGCTCTTCTCTTCTGATAACGATTCCCCGTCAAAGGAAGATTCCCCGCCAAAGGAAGATTCTCAAACAGTTCCCCAAGCGAATTTGGTGTCCACTCAGAAGAAAGAAGCTTGTTTGGACGTCCAAGATGTAAGCAATAAAGAATTGAAAATGCGGATAAAGGAGTACTTCAAAGGTAACGAAGAAGCACTTCCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGCTAGAAAGCATGAGGATACGGATGATGAACTTGTTGAAGAACTAAGAATGAAACCGTTGGAAGATGTCAAGGACAGAGAATTTGAATCTGATTTTGAAGAACTGCATGATACGGATGAAGAGATTGACGACCTTTATTATGCTAAAAATTTAGTTATGGAAAGAATGGCAAAGGATCCATACTTCAACATGGATGACAAAAAATGGGAGGATATTGTTCAGGATGCCGTAAATCATGGGATCCTGAGTGACACCAAGGCGTGTGAAGCGATCTTGGAGGATATGCTCAGTTGGGACAAGCTTCTTCCAGATGATTTAAAGAAAAAAGTAGAAGCAAGGTTCAATGAGCTGGGGGATTTGTGTGAAAAGGGGGAGCTTGAACCTGAGGAAGCTTACAATCAGTTTAAAAAATTTGAAGATGAGGTGGTCATGGAATATGGAAAGATGATGGAGGCAGAAGCTCCAACGTTCGATGAAACTGATGTGCAAGACAATAAAAAGGACTTGGATGACCCACCAGGTGAAGGGCCAATTCTTAGATGGCAAACAAGGGTTGTGTTTGCACCAGGTGGGGATGCATGGCATCCCAGAAACCGAAAAGTGAAACTATCTGTTACTGTGAAGGAGCTTGGTTTATCAAAGTTCCAGTTTCGTCGACTGAGGGAGTTGGTTGGTAAGCGCTACCATCCTGGGAAAGATGAGCTTACGATTACTAGTGAGAGGTTCGAACATAGAGAGGAAAATAGGAAGGATTGCCTTAGGACTCTTCTCTCTCTCATTGAGGAAGCTGGAAAAGCCAACCAACTTGTAGAGGATGCTCGAACTTTGTATGTGAAGGAGAGGTTGCGAGCAAATCCCCAGTTTATGGAGAGGCTGCGCGCCAAGAAAATGAGCTCGCAAGTATCAAGCCCTCAACCTGCTTGA 1278 43.58 MKWILLRNLPLRARNHLLLRSPIYTSNAHPSFFLSPPAISRFRLFSSDNDSPSKEDSPPKEDSQTVPQANLVSTQKKEACLDVQDVSNKELKMRIKEYFKGNEEALPSILEAILQRKLARKHEDTDDELVEELRMKPLEDVKDREFESDFEELHDTDEEIDDLYYAKNLVMERMAKDPYFNMDDKKWEDIVQDAVNHGILSDTKACEAILEDMLSWDKLLPDDLKKKVEARFNELGDLCEKGELEPEEAYNQFKKFEDEVVMEYGKMMEAEAPTFDETDVQDNKKDLDDPPGEGPILRWQTRVVFAPGGDAWHPRNRKVKLSVTVKELGLSKFQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLLSLIEEAGKANQLVEDARTLYVKERLRANPQFMERLRAKKMSSQVSSPQPA* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2506396 2511082 + CsaV3_1G004020.1 Csa01g00402 514899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00402 425 MobiDBLite consensus disorder prediction 272 293 - -
Csa01g00402 425 Pfam Mitochondrial ribosomal subunit protein 311 390 IPR019349 -
Csa01g00402 425 Gene3D - 297 422 - -
Csa01g00402 425 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 73 418 IPR039848 GO:0003735|GO:0032543
Csa01g00402 425 MobiDBLite consensus disorder prediction 272 292 - -
Csa01g00402 425 MobiDBLite consensus disorder prediction 45 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00402 K17413 MRPS35; small subunit ribosomal protein S35 - csv:101215739 843.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00402 Csa-Chr1:2506396 Csa01g00693 Csa-Chr1:4393715 1.69E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g282 . . . Bda15g00498 Bpe12g00708 . . . . . Cma10g00309 Cma11g00290 Car10g00294 Car11g00265 . . Cpe04g01390 . . . . . . . Cla06g01448 Cam06g1601 Cec06g1663 Cco06g1657 Clacu06g1566 Cmu06g1519 Cre06g2330 Cone2ag0741 . Cone13ag0313 . . . . . Blo13g00185 . . . . . . Bma08g00003 . Cmo10g00332 Cmo11g00295 . . . . . . . . . . . . . . . . . . . . Lsi06g01314 Csa01g00402 Chy02g02347 Cme02g01724
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006242 1 0 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00402 Csa_Chr01 FPKM 3.99766 5.007689 0.574438 0.195931 0.423193 0.525557 0.597396 0.0 0.0 0.0