Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00403 ATGGATCCACCACCTCCGGCCAGTGCAACAACGGCCGCTGCTGCTAACTATGCACCCAACTCCATGCAGCATCACCATCAAAACAACTATCAAGAATCCATTGAATCCTCACCCCGTTCCCACAATGCCGATTGGGACGACCCTCTCCCCCCAGTTCCCGGCGCCAAGCTCCGTCTCATGTGCAGCTATGGCGGCCACATTATCCCCCGTCCTCACGATAAGTCCCTCTGCTACGTCGGTGGCGACACTCGTATTGTCGTCGTCGACCGCCATTCCTCACTCTCTGACCTCTGCATGCGTCTCTCCCGAACACTCCTTAATGGCCGCCCTTTCACCCTCAAGTACCAGCTCCCTCACGAAGATCTCGATTCCCTTATTTCCATTGCGACGGATGAAGATCTCGAGAATATGATTGAGGAATATGACCGAATCACTATGGCTTCGCCGTTGAAACCTTTACGAATTCGTTTGTTTCTCTTCTTCATCAAGCCAGAAACTGCGGCGTCTATGGGTTCGTTGCTTGATGATGCTAAACACGAAACGTGGTTTGTTGATGCCTTAAATAACTCTGCTGGGATGATTCCTAGAGGGCTTTCTGATTCGGCTACTATGGAATGTATGGTGAATCTCGACGCGGTTCATACGAGTGATTCGTGTAATGATTTGGAAAATCAAGGTCATGATTCTTTAGGGCATATTGACAAACAGGTTGTGAAGAATAGTAGTTCGGCTCAAGATGTACAATCGATTCCTGATTCTCCTGCTGTGGAAAATGATTCTTCGTTTGGTTCCTCTTCTTCGGTGCCATCAATGTCCAATTTGCCGCCGATACGTGTCCGGGTGGAAGAGACGGAGGGTAGAGTTCAAGATCCGAAGGTGGGATTGGAAGAGCAGTTTGGGCAGATGAATTTTGGTGTTCCTCCAATTCCTACGGCGTTGGCTGCTGCTGCAGCAACTATTCCATTGGGTGTTATTTCAAATCATGAAAACGCCAATCGGGTCTTTCTCGACGACGAGAGACCGGAACAGGCCGGTACGGTGGCGTTTCGGAAGCCTCCATTGCCATTGCAAACCTTGCAAAACAGGGGTGTTGCCAGTCCTGTTGTTAGCGGTGGTTTTGGTCTACCGTCGCCGGATTCTGTTGCCAGTGATAGTAGCATAGCATCAGCAAATTCTCAGTCCAAACCCATATATTTTCATGACCAAATTATGAGAGAGAACCAAGTTCAAGCCTCTCCCATTACAGAAAGTGATGGTTTCCTAACAAGTCAACAAGTACCAATTCAACACCTTGATCCTGCTTATCTCTTGACTTCACAATTAGATCAGAAGCAACCACAACAATTCGTCCACGCGACCACCCATTACATCCATCACCACCACCCTGCAGCCGCAGCGGGGCATGTCCCCGTTCAACAGTATTATCATCCCATTTACACTCCAACACCATCCCAACAGCAACTTCATCATCCAATTGATCAGCAATATCCGGTCTATCTAATGCCCATTACACAAACTCAACCAACCTACAATATGTCAGTCCAATCAAGTCCTGCTGAAACTCCCTTGGCTGTACCCAACCGGCAAGCATCCGCTAGCCCCGCCATTGTCTCTTCTTCAATCGTTTACAATGATAGTAATCAACCATCCCTCTATCCTCAGAAAGTTACCGCGGCTATGCCAGAAATGGCGGCTAACGTGTACAGAACTGCGGTGACGTCAAATCCTCCTCCCTTATTACAAGTTCCTCACAATCAGTTCCAACAACCATACATGGGTCTTCCCCAAATGAACTATCCATCTCAATCTTTAGCTGTCGCTCCTGCCCCCTCAGGCACTGCTAATTATGGATTTGACTACACTAATGCTCCACCCCAGAACATCCCAGCTACGCCGATGGCTTCTCAGTACCAAACTATGACTCAGGCAGCCGCGGCCGCTCTATCCGATGCTTCTAGACAGCTTCCAGTAGATGGCACACAGCAGCAGCAGGTCAGGAACTCATAG 2007 48.88 MDPPPPASATTAAAANYAPNSMQHHHQNNYQESIESSPRSHNADWDDPLPPVPGAKLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLSDLCMRLSRTLLNGRPFTLKYQLPHEDLDSLISIATDEDLENMIEEYDRITMASPLKPLRIRLFLFFIKPETAASMGSLLDDAKHETWFVDALNNSAGMIPRGLSDSATMECMVNLDAVHTSDSCNDLENQGHDSLGHIDKQVVKNSSSAQDVQSIPDSPAVENDSSFGSSSSVPSMSNLPPIRVRVEETEGRVQDPKVGLEEQFGQMNFGVPPIPTALAAAAATIPLGVISNHENANRVFLDDERPEQAGTVAFRKPPLPLQTLQNRGVASPVVSGGFGLPSPDSVASDSSIASANSQSKPIYFHDQIMRENQVQASPITESDGFLTSQQVPIQHLDPAYLLTSQLDQKQPQQFVHATTHYIHHHHPAAAAGHVPVQQYYHPIYTPTPSQQQLHHPIDQQYPVYLMPITQTQPTYNMSVQSSPAETPLAVPNRQASASPAIVSSSIVYNDSNQPSLYPQKVTAAMPEMAANVYRTAVTSNPPPLLQVPHNQFQQPYMGLPQMNYPSQSLAVAPAPSGTANYGFDYTNAPPQNIPATPMASQYQTMTQAAAAALSDASRQLPVDGTQQQQVRNS* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2512675 2515423 - CsaV3_1G004030.1 Csa01g00403 514900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00403 668 SUPERFAMILY CAD & PB1 domains 72 170 - -
Csa01g00403 668 MobiDBLite consensus disorder prediction 240 274 - -
Csa01g00403 668 Gene3D - 76 159 - -
Csa01g00403 668 MobiDBLite consensus disorder prediction 13 38 - -
Csa01g00403 668 Pfam PB1 domain 72 160 IPR000270 GO:0005515
Csa01g00403 668 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 663 - -
Csa01g00403 668 CDD PB1_UP2 60 160 - -
Csa01g00403 668 SMART PB1_new 71 160 IPR000270 GO:0005515
Csa01g00403 668 MobiDBLite consensus disorder prediction 1 49 - -
Csa01g00403 668 MobiDBLite consensus disorder prediction 240 273 - -
Csa01g00403 668 PANTHER OS05G0427100 PROTEIN-RELATED 1 663 - -
Csa01g00403 668 ProSiteProfiles PB1 domain profile. 56 160 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00403 - - - csv:101210340 1217.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00403 Csa-Chr1:2512675 Csa06g03572 Csa-Chr6:28934816 1.50E-40 dispersed
Csa02g02570 Csa-Chr2:22463589 Csa01g00403 Csa-Chr1:2512675 2.97E-31 dispersed
Csa07g00641 Csa-Chr7:4616583 Csa01g00403 Csa-Chr1:2512675 3.30E-35 transposed
Csa01g00403 Csa-Chr1:2512675 Csa05g02644 Csa-Chr5:27484728 2.84E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g275 . . . . . . . . . . Cma10g00310 . Car10g00295 Car11g00266 . . Cpe04g01389 . . . . . . . Cla06g01447 Cam06g1600 Cec06g1662 Cco06g1656 Clacu06g1565 Cmu06g1518 Cre06g2329 . Cone16ag0553 Cone13ag0315 . . . . . . . . . . . . . . Cmo10g00335 Cmo11g00297 . . . . . . . . . . . . . . . . . . . . Lsi06g01313 Csa01g00403 Chy02g02346 Cme02g01723
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009839 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00403 Csa_Chr01 FPKM 2.821898 3.194826 5.00463 4.858544 11.98598 12.652964 12.458726 3.773935 3.146058 3.561984