Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00408 ATGGCCGATACTGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAACCTAAGTCCAAGCGCGGTGCAGATGTCGAAGATGCTGATGTTACTGTGAAGAAGTTTAAAACTCAAGCTGCTGCCGATGAAACTGGCGCTAGAAACTTGGAAGCTGTCAATGGTGATGAAGAACTTAAGGTCATCAAGAGGGATGTCGAGTTTGTAATTGAAGCGGATGCTGCGGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTGGGTTTTGCTCTTGGATGCAAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTACGATGGACATGGGGGTCGGTTAGCTGCCGAGCACGCTCAAAAGCATTTGCAGAAGAACGTTCTCTCATCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCAATACTTGATGGGTTTCGGAAAACAGATGAGTCTCTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTCTTAGGTCAAACAGTTTTCGTTGCTAATGTTGGTGACGCTAAAGCAGTTGTAGCCCGATCTTTGACTACTGATAAATCAACAACTAATTCCAATGGTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAACATAAGGCAATCTACCCGCAGGAAAGAGCTCGCATTCAAAAAGCTGGTGGTGTTGTTGGTTCAAATGGTCGCTTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTTGGAGATCGCCAATTTAAAAAGTTGGGTGTTATCGTGACTCCGGACATTCATTCTTTTGAATTGACTGATAGGGAACATTTTATCATTCTCGGATGTGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCAGTCGATTTTGTGCAGAAATTATTGAAGGATGGTTTGTCCGTAGCATCAATAAGTCGACGTCTTGTGAGGGAAGCAATCCGTGAGCGACGCTGTAAAGATAACTGTACTGCAATTGTCGTTGTCTTCAGGCCCAAATGA 1047 44.89 MADTAKSILEEETSKLEPKSKRGADVEDADVTVKKFKTQAAADETGARNLEAVNGDEELKVIKRDVEFVIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLQKNVLSSGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSLTTDKSTTNSNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIVTPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLSVASISRRLVREAIRERRCKDNCTAIVVVFRPK* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2556187 2562245 + CsaV3_1G004080.1 Csa01g00408 514905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00408 348 Pfam Protein phosphatase 2C 75 334 IPR001932 -
Csa01g00408 348 Gene3D - 57 346 IPR036457 -
Csa01g00408 348 SUPERFAMILY PP2C-like 68 346 IPR036457 -
Csa01g00408 348 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 19 342 - -
Csa01g00408 348 PANTHER PROTEIN PHOSPHATASE 2C 19 342 IPR015655 GO:0004722|GO:0006470
Csa01g00408 348 SMART PP2C_4 63 343 IPR001932 -
Csa01g00408 348 MobiDBLite consensus disorder prediction 1 28 - -
Csa01g00408 348 CDD PP2Cc 75 345 IPR001932 -
Csa01g00408 348 ProSiteProfiles PPM-type phosphatase domain profile. 71 345 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00408 Csa-Chr1:2556187 Csa02g02502 Csa-Chr2:22052604 1.10E-35 dispersed
Csa01g00408 Csa-Chr1:2556187 Csa03g02203 Csa-Chr3:19119262 8.77E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00408 K17500 - csv:101216467 679.863