Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00409 ATGGACAAGGGAAGTCTTTTTTCCGAGAAAATAAAGCTTCTTCTTGGATTGGTTGTTTTGCAGTTGTGTTATGCAGGATTTCACATTGTGTCAAGAGTTGCTTTAAACATTGGTGTTAGTAAAGTTGTTTATCCGGTGTATCGGAACGCAATCGCTTTAGCTCTATTGAGTCCTTTTGCTTATTTTCTAGAGAAGAATGAAAGGCCACCTCTTACTTTCTCATTGCTGCTTCAGTTCTTTCTTCTAGCTTTATTGGGGATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCCCCAACTTTTGCTTCTGCAATGCAAAACTCAGTTCCTGCTATTACCTTTGTGATGGCTTCTGTTCTGAGGCTAGAGCAAGTCAACTTCAGAAGGATAGATGGTTTGGCAAAGATTTTGGGAACCATAGGGAGTGTTGGAGGTGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTCTCCACAACAATTACCTGACTCAAGGAAGTAGTATCTTAGAGATGGATGACCCTACAATTAAAGTCCAAAATTGGAGATGGGGTTGTATTTACCTGCTAGGCCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGGTTCTTTATTGAAGAAGTATCCAGCAAAACTAACATTAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATAGCTGGCTTTGTGGAAACAGATTATCAATACTGGAAAATCCAATCTGTTGAAGAACTCTTCACAATCTTATATGCTGGTATTGTAGCCTCTGGCATTGTCTTTTCCCTCCAAACATGGTGCATCCACAAAAGTGATCCTGTCTTTGTTGCTGTTTTCCAACCTCTCCAAACTGTCCTAGTAGCCATCATGGCGTTCCTCATCCTCGGAGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTGTACTTAGTTTTGTGGGGAAAAAGTAAAGAAAAAGCATTGGAAGAAGAAGATAAGTGTTTGAAACATCCTCTTTTGGATGACCAAAAAGAAGAGCAAGAGAATGTTGTGTTAGACATAGCATGA 1089 41.05 MDKGSLFSEKIKLLLGLVVLQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLLQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASVLRLEQVNFRRIDGLAKILGTIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQGSLLKKYPAKLTLTSYTCFFGLIQFLVIAGFVETDYQYWKIQSVEELFTILYAGIVASGIVFSLQTWCIHKSDPVFVAVFQPLQTVLVAIMAFLILGDRLFSGGVIGAVLITLGLYLVLWGKSKEKALEEEDKCLKHPLLDDQKEEQENVVLDIA* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2564011 2566523 + CsaV3_1G004090.1 Csa01g00409 514906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00409 362 Pfam EamA-like transporter family 17 141 IPR000620 GO:0016020|GO:0016021
Csa01g00409 362 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Csa01g00409 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
Csa01g00409 362 PANTHER WAT1-RELATED PROTEIN 10 336 IPR030184 GO:0016021|GO:0022857
Csa01g00409 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 331 - -
Csa01g00409 362 PANTHER WAT1-RELATED PROTEIN 10 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00409 Csa-Chr1:2564011 Csa03g04250 Csa-Chr3:37232371 6.24E-136 dispersed
Csa01g00409 Csa-Chr1:2564011 Csa02g02098 Csa-Chr2:19067121 1.31E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00409 - - csv:101210826 703.36