Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00410 ATGCCTTACTCATCATCCTTCTTCAACTCCTATTTCAGGAGGACTTCCATGTCCATCTCCTTCAAACCCACTTCTCCTTTTCCATTTTCAACCCGTTTCACACCTTGGACTCCTCGTCTTTTCACCCGGAGGAACATTTCAATGGGGTTTGTCAACTTACACCACTCCCGTCCGGCCTCTGTTTCTGGTGTTGTTCGTTGTTCCACCACCCAATCCAAGTGGGTTGAAGTTTCCTTGAAGGAGAAACAACAGGACCATGTCAAGGGTTTCAAGCAAAGGAATATTGCGTTCCCCTTTGGGCAGCATCAGTCTAGCTATAATTATGGTCGCTTTGCGTGTGACGATGTTTCTAGTGATGAATCTGATGTCGAATTTGGCTCTCCCCAGGCCCAAAGGAGTTCATCAACCCTTGATAACGTAGACGAGTGGAGATGGAAGTTAACTATGCTTCTACGAAACAATGAGGAAGTAGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGATTTTGAGCAACTTTCAGCATTGGCAACCCGAATGAATTTGCATAGCCGTCAATATTCCAGAGTTGTTGTATTTAGTAAAGATCCCCTGCCGAATTATAGGCCGGACCTGGATGATAAGCGACCACAGAGAGAGGTGGTCTTACCTTTTGGTGTCCAAAGGGAAGTTGAAGGTCATCTAAGATTGTACCAATCTTCTTACAAGTCTGTGTCAAGAGGATGTTTTTCAAACAGTTACTTGCCAAATTCTGGCATTGCTGAAAACTGTGCTAACAATAATGGACTGTTTCAGCACCAGGAACCTTCGACAACACAAAGTGTTGTCATGGAGAAAATTCTTCGCCGCAAAAGTTTGCAACTGAGGTATCAGCAGCAAGAATGGCAGGAATCTCTTGAGGGCCAAAAAATGATAGAATTTCGCAAGAGTCTCCCTGCCTTCAAAGAGAGGGAAGCATTGTTAAAGGCCATTTCAGAAAATCAGGTAGTCGTTGTCTCCGGTGAAACTGGTTGTGGCAAAACCACACAGCTTCCTCAGTATATTTTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTCTTGTAGTATTATATGTACTCAGCCTAGACGTATTTCTGCCATGTCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTGGGAGAGTCTGTTGGTTATAAAGTTCGGCTTGAGGGTATGAAAGGAAGGGATACCCGTCTTCTCTTTTGCACCACTGGTGTACTATTGAGAAGATTGCTTGTTGACAGAAATTTGAAGGGTGTAAGTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAACGAAGATTTTCTTGTTATTGTCCTGAAAGATCTTCTTCCTCGCCGGCCGGATTTGAGGTTGATCTTAATGAGCGCAACTCTAAATGCCGAGCTTTTTTCTTCTTATTTTGGTGGTGCTCCAACGATGCATATCCCTGGTTTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTTGAGATTACTGGCTATAAATTAACTTCATATAATCAAATTGATGATTATGGTCAAGAAAAGGCGTGGAAAATGCAAAGACAAGCTCAAGCTCTAAAGAAAAGGAAGACCCAGATTGCTTCATCTGTGGAGGATGCATTTGAGGCTGCTAACTTTTCAGCATACAGTCCTCGGACTCAGGAGTCTCTATCCTATTGGAATCCTGATTCCATTGGTTTCAACCTCATTGAGCATGTCCTCTCCTACATTGTCAAGAAGGAGAGGCCAGGTGCTATATTAGTTTTTATGACCGGTTGGGACGATATAAACTCTTTAAAGGACCAGCTCCTGTCTCACCCTTTATTAGGGGATCCTAGCAGAGTCTTGCTCCTTGCATGTCATGGTTCAATGGCCAGCTCTGAGCAGAAATTGATATTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCTACAAACATGGCAGAGACCAGTATCACCATCAATGATGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAGGAGACATCCTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCACGACAAAGAAGAGGTAGGGCTGGTCGTGTTCAACCCGGCGAGTGTTACCATCTCTATCCCAAATGCGTATATGATGCTTTTGCTGATTATCAACTGCCAGAACTTTTAAGGACTCCATTGCAGTCTTTGTGTTTGCAAATCAAGAGTCTGCAACTTGGAAGCATATCAGATTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCAGTTCAAAATGCCATAGATTATTTGAAGATAATTGGAGCTCTGGATAACAAAGAAAATCTAACAGTTCTTGGGAAACACTTGTCAGTTCTTCCAGTTGAGCCTAAACTAGGGAAAATGCTTATATTAGGAGCTATTTTCAACTGCCTTGATCCAATTATGACTATTGTTGCTGGTCTTAGTGTGAGAGATCCTTTCCTTATGCCATCTGATAAAAAGGATTTAGCTGAATCAGCAAAAGCACACTTTGCTGCACGTGACTGCAGTGATCATCTTGCCTTAGTTCGAGCTTATCAGGGTTGGAGAGATGCTGAAAAACAGCAATCCGGTTATGAGTACTGTTGGAGAAACTTTCTCTCTATGCAAACTCTTAGAGCCATCGACTCTCTGAGGAAGCAGTTCTTCTTTTTGCTGAAGGACGCTGGTCTAGTTGATTATGATTCAGAAAAATGTAACATCTCAAACCACGACGAGCACTTAATCCGTGCAGTCATCTGTGCCGGTTTGTTTCCCGGAATTTGCTCTGTTGTGAACAAAGAGAAATCAGTAGCTTTAAAAACAATGGAAGATGGTCAGGTTATGCTATACTCGAACTCAGTTAATGCTGGATATCCAAAAATTCCCTACCCTTGGCTGGTGTTCAATGAAAAGGTGAAAGTAAATTCAGTCTTTCTTCGGGATTCTACTGGGGTATCTGACTCTGTCCTGCTTTTATTTGGAGGAAATGTTTCTAGAGGAGGACTTGATGGTCACCTCAAAATGCTGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGCCTTAAAAGGGAGCTTGATGAGCTTGTTCATCAAAAACTTTTGAATCCGAAGTTGGATATGGAGCCACACAATGAGCTACTCACAGCGTTAAGGTTGTTGATTTCAGAGGATCACTGTGCGGGTCGGTTTGTCTTTGGTCGACATATGCCTGTACCATCAAAAAAAGCAATGACCGACAGTTTACCTCGACAGAAACATGGTGATGGAGGTGGGGGTGATAATTCCAAGAATCAGCTTCAGACCCTACTTCTGAGAGCTGGACATGAAACACCAACTTACAATACCAAGCAATTAAGAAACAATCAGTTCCGCTCCACTGTTATTTTCAACGGATTGAACTTTGTGGGCCAACCCTGTGGCAGCAAGAAACTTGCGGAAAAAGATGCGGCTGCTGAGGCTCTTCTATGGCTACAGGGTGAGACACATTCATCTTCCCAAGCTATCGATCACGCTTCCATACTTCTAAAAAAAAGCAGAAAGAAAAATACCAATCCATCATTTCATAGTGCCAAATGGAGTTGA 3648 42.68 MPYSSSFFNSYFRRTSMSISFKPTSPFPFSTRFTPWTPRLFTRRNISMGFVNLHHSRPASVSGVVRCSTTQSKWVEVSLKEKQQDHVKGFKQRNIAFPFGQHQSSYNYGRFACDDVSSDESDVEFGSPQAQRSSSTLDNVDEWRWKLTMLLRNNEEVEVVSREKKDRRDFEQLSALATRMNLHSRQYSRVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSYKSVSRGCFSNSYLPNSGIAENCANNNGLFQHQEPSTTQSVVMEKILRRKSLQLRYQQQEWQESLEGQKMIEFRKSLPAFKEREALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVSHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEITGYKLTSYNQIDDYGQEKAWKMQRQAQALKKRKTQIASSVEDAFEAANFSAYSPRTQESLSYWNPDSIGFNLIEHVLSYIVKKERPGAILVFMTGWDDINSLKDQLLSHPLLGDPSRVLLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISDFLSNALQPPEPLSVQNAIDYLKIIGALDNKENLTVLGKHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKKDLAESAKAHFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDYDSEKCNISNHDEHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLLNPKLDMEPHNELLTALRLLISEDHCAGRFVFGRHMPVPSKKAMTDSLPRQKHGDGGGGDNSKNQLQTLLLRAGHETPTYNTKQLRNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHASILLKKSRKKNTNPSFHSAKWS* 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2569251 2577675 + CsaV3_1G004100.1 Csa01g00410 514907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00410 1215 Pfam DEAD/DEAH box helicase 320 472 IPR011545 GO:0003676|GO:0005524
Csa01g00410 1215 SMART DRBM_3 1117 1180 IPR014720 -
Csa01g00410 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 577 751 IPR001650 -
Csa01g00410 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 488 IPR014001 -
Csa01g00410 1215 CDD DEXHc_RHA-like 327 487 - -
Csa01g00410 1215 SUPERFAMILY dsRNA-binding domain-like 1111 1181 - -
Csa01g00410 1215 Gene3D - 260 489 IPR027417 -
Csa01g00410 1215 SMART helicmild6 605 711 IPR001650 -
Csa01g00410 1215 MobiDBLite consensus disorder prediction 1095 1119 - -
Csa01g00410 1215 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 430 439 IPR002464 -
Csa01g00410 1215 PANTHER ATP-DEPENDENT RNA HELICASE 102 1126 - -
Csa01g00410 1215 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 930 1012 IPR011709 -
Csa01g00410 1215 Pfam Helicase conserved C-terminal domain 578 710 IPR001650 -
Csa01g00410 1215 CDD SF2_C_RHA 557 719 - -
Csa01g00410 1215 SMART ha2_5 773 864 IPR007502 GO:0004386
Csa01g00410 1215 Pfam Helicase associated domain (HA2) 774 851 IPR007502 GO:0004386
Csa01g00410 1215 Pfam Double-stranded RNA binding motif 1117 1179 IPR014720 -
Csa01g00410 1215 SMART ultradead3 309 502 IPR014001 -
Csa01g00410 1215 Gene3D - 1098 1184 - -
Csa01g00410 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 880 IPR027417 -
Csa01g00410 1215 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 102 1126 - -
Csa01g00410 1215 CDD DSRM_SF 1122 1176 - -
Csa01g00410 1215 Gene3D - 753 857 - -
Csa01g00410 1215 Gene3D - 566 729 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00410 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 2380.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00410 Csa-Chr1:2569251 Csa03g03498 Csa-Chr3:31324631 0 dispersed
Csa05g02682 Csa-Chr5:27721015 Csa01g00410 Csa-Chr1:2569251 0 transposed
Csa01g00410 Csa-Chr1:2569251 Csa05g02653 Csa-Chr5:27531154 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00410 Csa_Chr01 FPKM 1.095699 1.367869 3.222523 2.550233 2.037038 1.255315 2.261633 4.444934 4.478961 4.337491