Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00416 ATGGCTGACCTCGATCCATCAAAGAAAGTGGCTGATAGATATTTAAAGCGTGAGGTTCTTGGAGAGGGTACCTATGGTGTTGTATATAAAGCCATTGATACTCAGACAGGTCAGACGGTTGCCATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACTGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTAAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGGAATTTGCATCTTGTGTTTGAATTTATGGAGACAGACCTTGAAGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATCAAATCATACCTTCAGATGACGTTGAAAGGCCTTGCATATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAACTGAAACTTGCGGATTTTGGTTTGGCTCGGATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTTTTTGCTCGATGGTACAGAGCACCTGAGCTATTGTTTGGTACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCGTTTGGAACGCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTCCCTGCACCTCCTCTAAGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAAAATCTAGAATTACCATTCAACAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTACGAACTCAAACTCTCGAGTTTTGGATTTAAATTCAAATGACGGTCCTACTGTACTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGATCGTGAGGCTTTTGAAGGCAATGCATATAGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGTTGGCTGCTGGAAATACGAGCAAGAATGAAGCAGCGCCTATGTCGTTGGATTTTTCTGTATTTGGTGGAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1257 41.21 MADLDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFTSAPLPTDPSKLPRPTSKREPTNSNSRVLDLNSNDGPTVLSPPRKSRRVMPDREAFEGNAYRADRLDDHVNEVRELAAGNTSKNEAAPMSLDFSVFGGKPPNRPTINSADRSHLKRKLDLEFQQ* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2598315 2604255 + CsaV3_1G004160.1 Csa01g00416 514913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00416 418 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Csa01g00416 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Csa01g00416 418 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Csa01g00416 418 PANTHER CELL DIVISION PROTEIN KINASE 9 362 - -
Csa01g00416 418 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00416 418 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00416 418 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 362 - -
Csa01g00416 418 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Csa01g00416 418 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00416 418 MobiDBLite consensus disorder prediction 294 345 - -
Csa01g00416 418 MobiDBLite consensus disorder prediction 372 407 - -
Csa01g00416 418 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Csa01g00416 418 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Csa01g00416 418 MobiDBLite consensus disorder prediction 310 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00416 Csa-Chr1:2598315 Csa05g02229 Csa-Chr5:25043667 3.57E-80 dispersed
Csa02g00116 Csa-Chr2:814024 Csa01g00416 Csa-Chr1:2598315 9.00E-22 dispersed
Csa01g00416 Csa-Chr1:2598315 Csa05g02741 Csa-Chr5:28151896 9.82E-90 transposed
Csa01g00416 Csa-Chr1:2598315 Csa07g00931 Csa-Chr7:7979653 2.13E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77740 PF00069 Pkinase 1.80E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00416 K02202 - csv:101217645 843.573