Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00416 | ATGGCTGACCTCGATCCATCAAAGAAAGTGGCTGATAGATATTTAAAGCGTGAGGTTCTTGGAGAGGGTACCTATGGTGTTGTATATAAAGCCATTGATACTCAGACAGGTCAGACGGTTGCCATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACTGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTAAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGGAATTTGCATCTTGTGTTTGAATTTATGGAGACAGACCTTGAAGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATCAAATCATACCTTCAGATGACGTTGAAAGGCCTTGCATATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAACTGAAACTTGCGGATTTTGGTTTGGCTCGGATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTTTTTGCTCGATGGTACAGAGCACCTGAGCTATTGTTTGGTACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCGTTTGGAACGCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTCCCTGCACCTCCTCTAAGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAAAATCTAGAATTACCATTCAACAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTACGAACTCAAACTCTCGAGTTTTGGATTTAAATTCAAATGACGGTCCTACTGTACTCTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGATCGTGAGGCTTTTGAAGGCAATGCATATAGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGTTGGCTGCTGGAAATACGAGCAAGAATGAAGCAGCGCCTATGTCGTTGGATTTTTCTGTATTTGGTGGAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA | 1257 | 41.21 | MADLDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFTSAPLPTDPSKLPRPTSKREPTNSNSRVLDLNSNDGPTVLSPPRKSRRVMPDREAFEGNAYRADRLDDHVNEVRELAAGNTSKNEAAPMSLDFSVFGGKPPNRPTINSADRSHLKRKLDLEFQQ* | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2598315 | 2604255 | + | CsaV3_1G004160.1 | Csa01g00416 | 514913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00416 | 418 | ProSitePatterns | Protein kinases ATP-binding region signature. | 20 | 44 | IPR017441 | GO:0005524 | |
Csa01g00416 | 418 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00416 | 418 | CDD | STKc_CDK7 | 13 | 307 | IPR037770 | GO:0005675|GO:0008353|GO:0070985 | |
Csa01g00416 | 418 | PANTHER | CELL DIVISION PROTEIN KINASE | 9 | 362 | - | - | |
Csa01g00416 | 418 | ProSiteProfiles | Protein kinase domain profile. | 14 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00416 | 418 | Pfam | Protein kinase domain | 16 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00416 | 418 | PANTHER | CYCLIN-DEPENDENT KINASE D-2 | 9 | 362 | - | - | |
Csa01g00416 | 418 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 310 | - | - | |
Csa01g00416 | 418 | SMART | serkin_6 | 14 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00416 | 418 | MobiDBLite | consensus disorder prediction | 294 | 345 | - | - | |
Csa01g00416 | 418 | MobiDBLite | consensus disorder prediction | 372 | 407 | - | - | |
Csa01g00416 | 418 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 94 | - | - | |
Csa01g00416 | 418 | SUPERFAMILY | Protein kinase-like (PK-like) | 10 | 301 | IPR011009 | - | |
Csa01g00416 | 418 | MobiDBLite | consensus disorder prediction | 310 | 334 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00416 | Csa-Chr1:2598315 | Csa05g02229 | Csa-Chr5:25043667 | 3.57E-80 | dispersed | |
Csa02g00116 | Csa-Chr2:814024 | Csa01g00416 | Csa-Chr1:2598315 | 9.00E-22 | dispersed | |
Csa01g00416 | Csa-Chr1:2598315 | Csa05g02741 | Csa-Chr5:28151896 | 9.82E-90 | transposed | |
Csa01g00416 | Csa-Chr1:2598315 | Csa07g00931 | Csa-Chr7:7979653 | 2.13E-87 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77740 | PF00069 | Pkinase | 1.80E-72 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00416 | K02202 | - | csv:101217645 | 843.573 |