Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00419 ATGGTGGAGAAAGGTGCCGATTCGTCGTTGAACTCACCCCTTCTTCACATTTCTGAAGGTGGGTTGATTTCTTCTAATGGGGTGATACGAACAAATGATAAAAATCATACAAGGCAACAAGTAGCGAGGGAACTAAAGAGGCAGTTATGGCTAGCTGGGCCTTTAACATTGGTTGGTCTATTACAATACTCTTTGCAGATGATTTCCGTCATGTTCATTGGTCATCTCGGGGAACTGCCTCTCTCTGGTGCTTCTATGGCCACTTCTTTCGCAACAGTCACTGGTTTCAGCTTATTGATGGGGATGGCTAGTGCTTTGGATACATTTTGTGGTCAATCTTATGGAGCAAAGCAGTATCATATGCTGGGAATTCATATGCAGAGAGCTATGGTTGTTCTCTTACTTGTGAGCGTCCCTCTTGCAGTTATTTGGGCTAACACAGGAGAGATTCTGAAATTACTTGGCCAAGATCATGAAATTGCAGCTGAAGCTGGGAAATATGCCATTTGGATGATTCCAACTCTTTTTGCGTATGGTTTACTTCAATGTTTGAACAGATTCTTACAAACCCAAAGCATTGTTTTACCAATGGTGATGTGTTCTGCAGCAGCTGTTTTTCTTCACATCCCCATTTGTTGGATTTTTATATATAAAGTAGGACTTGGACTTCGAGGAGCGGCTATCGCTAGCTCCATCTCTTATTCGTTCAATGTGTTGATAACTATGCTTTATGTTAAGTTCTCTTCTTCATGTTCCGAGTCTTGGACAGGCTTTTCAGTGAAGGCTTTTCAAAACATCCCAACTTACCTTAGACTCGCAATTCCTTCAGCTTGCATGGTTTGCTTGGAAATGTGGTCATTTGAGTTGATGGTTATCTTATCTGGGCTTCTACCAAATCCAAAATTAGAGACATCAGTACTTTCAATAAGCCTTAATACAGGTGCAGTAATTTGGAATTTCTCATTGGGCATGAGTGGTGTAGGAAGCACGCGAGTCTCAAACGAACTAGGAGCCGGCCATCCTTCAGCAGCGAAGCTAGCTGGGTGTGTAGTTATGACAATGGTCACTATTCAGGGGATGCTTGTTGGAACTTTCTTCATTCTTATACGTAATGTTTGGGGCTATGCTTTTAGCAACGAACAAGAAGTGGTTGAATATTTAGCAAAGATGCTTCCTATAGTTGCAGTTTCTGAATTTTTCTCAGGACTTCAAAATGTGCTTTCAGGCATTGCTAGAGGATGTGGGTGGCAGAAGATCGGTGCATTTGTCAATCTTGGATCGTATTATATCGTGGGAGTTCCATTTGCAATTTTGCTTGCTTTTGGCTTTCACTTCGGTGGAAAGGGGCTGTGGTTTGGCATCATGTCTGCACTCATAGTACAAACATCTTCTCTTGGTATCATTGCCATCCGCACCAATTGGGACCAAGAAGCAAAGAAAGCTACAGAACGAGTATACGACACTGTAATTCCAAGTAATGTTGTTTCATGA 1491 41.99 MVEKGADSSLNSPLLHISEGGLISSNGVIRTNDKNHTRQQVARELKRQLWLAGPLTLVGLLQYSLQMISVMFIGHLGELPLSGASMATSFATVTGFSLLMGMASALDTFCGQSYGAKQYHMLGIHMQRAMVVLLLVSVPLAVIWANTGEILKLLGQDHEIAAEAGKYAIWMIPTLFAYGLLQCLNRFLQTQSIVLPMVMCSAAAVFLHIPICWIFIYKVGLGLRGAAIASSISYSFNVLITMLYVKFSSSCSESWTGFSVKAFQNIPTYLRLAIPSACMVCLEMWSFELMVILSGLLPNPKLETSVLSISLNTGAVIWNFSLGMSGVGSTRVSNELGAGHPSAAKLAGCVVMTMVTIQGMLVGTFFILIRNVWGYAFSNEQEVVEYLAKMLPIVAVSEFFSGLQNVLSGIARGCGWQKIGAFVNLGSYYIVGVPFAILLAFGFHFGGKGLWFGIMSALIVQTSSLGIIAIRTNWDQEAKKATERVYDTVIPSNVVS* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2622473 2626066 - CsaV3_1G004190.1 Csa01g00419 514916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00419 496 Pfam MatE 275 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa01g00419 496 Pfam MatE 54 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa01g00419 496 CDD MATE_eukaryotic 44 480 IPR045069 GO:0042910|GO:1990961
Csa01g00419 496 PANTHER PROTEIN DETOXIFICATION 30 484 - -
Csa01g00419 496 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 484 - -
Csa01g00419 496 TIGRFAM matE: MATE efflux family protein 54 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00419 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101218365 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00105 Csa-Chr1:607833 Csa01g00419 Csa-Chr1:2622473 2.62E-174 dispersed
Csa01g00419 Csa-Chr1:2622473 Csa02g00599 Csa-Chr2:4330825 0 dispersed
Csa07g01337 Csa-Chr7:13269782 Csa01g00419 Csa-Chr1:2622473 2.64E-88 dispersed
Csa01g00417 Csa-Chr1:2604650 Csa01g00419 Csa-Chr1:2622473 4.25E-113 proximal
Csa01g00418 Csa-Chr1:2606644 Csa01g00419 Csa-Chr1:2622473 5.16E-126 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g255 . . . . . . . . . . Cma10g00316 Cma11g00297 . . . . . Bhi02g00115 . . . Hepe09g0239 . . Cla06g01437 Cam06g1592 Cec06g1652 Cco06g1644 Clacu06g1553 Cmu06g1508 Cre06g2318 . . . . . . . . . . . . Bpe07g01043 . . . . Cmo10g00340 Cmo11g00302 . . . . . . . . . . . . . . . . . . . . . Csa01g00419 Chy02g02327 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00419 Csa_Chr01 FPKM 0.0 0.0 4.737309 6.173308 0.0 0.0 0.0 0.0 0.0 0.0