Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00424 ATGGCTGGAGGTGATCAAGCAGATATGGCAGTTCACTCTCTTGGATCTAAACTTTCTTTAATTTCAGATCATGAACCTGAAAAATGTGGCAATAATAATGTCACCAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCTAAGGTCGTACCACCTATCTCGGTGGCTGCAGAGAGTGATCAAGCTCTTCGTCGGCCTCGAGGGCGACCTGCTGGGTCCAAAAACAAGCCTAAACCACCCATTATTGTTACCCGAGATAGCGCTAATGCACTACGAGCTCATGCCATTGAGGTTAGCACTGGGTGTGATGTCAACGAGAGCCTCTCCAACTTCGCTCGGAGGAAGCAGCGTGGCGTCTGCATTCTTAGCGGTAGCGGGTGTGTCACTAATGTTACGCTTCGCCAAGCTGCTTCCTCTGGTGCCATTGTCACTCTGCATGGCCGTTTTGAGATTCTTTCAATGTTGGGGTCGATCTTACCACCACCAGCACCGTCGGGAATCACTGGGCTGACAATTTACTTGTCCGGCGCACAAGGGCAGGTGGTCGGTGGCGTCGTAGTGGGAGCGCTCATTGCTTCCGGTCCAGTTGTGATCATGGCAGCAACATTCATGAACGCGACATTCGACCGTCTGCCATCTGACGACGAAGAAGTGGCAGCCACCATGCAGAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCAGATCTGTATGGAGTGCCACAAAATTTGATCACCAATAGCAGTCTTCCCCCGGAATTATACTCTTGGGCGACGGCTGGGAGAACCATGTCAAAGACTTAA 831 50.66 MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWATAGRTMSKT* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2655886 2656958 - CsaV3_1G004240.1 Csa01g00424 514921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00424 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 45 275 - -
Csa01g00424 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 275 IPR014476 GO:0003680
Csa01g00424 276 ProSiteProfiles PPC domain profile profile. 92 229 IPR005175 -
Csa01g00424 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 208 IPR005175 -
Csa01g00424 276 MobiDBLite consensus disorder prediction 26 44 - -
Csa01g00424 276 Gene3D - 95 231 - -
Csa01g00424 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 223 - -
Csa01g00424 276 MobiDBLite consensus disorder prediction 59 85 - -
Csa01g00424 276 CDD DUF296 96 179 IPR005175 -
Csa01g00424 276 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00424 Csa-Chr1:2655886 Csa06g00649 Csa-Chr6:5397986 1.37E-66 dispersed
Csa01g00424 Csa-Chr1:2655886 Csa03g01009 Csa-Chr3:8151266 2.23E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00424 - - csv:101219306 538.495