Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00426 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGTACTTCTTCTTCTTCTTCTTCTACTTCTAATTCTAATTCTAATTTTAGCTCTAATTCTGATTCTTCTGACCCTAATCTCAATTACCCAAATCTCCACAAGTTTGATTATGTTGATAATGGTGGTGTTAGTGGTGACCAATTGTTGAGTAGCGATTTACGCGCTCAATCGTCCATTGCCCACAAACGCAAACCTCTAAGGAAACAAACCCAACTCGGAGAAGGAGGGATTCTTGAGCAATTACCTGAGGAGGAGGACGACGATCTTGATTACTCTGCCTTGAAGCTCATTAAAGTTCCTAAACGGATCAATCACTTCAGAAATCCTCCTCCTCCTCTTCCTTCTGCTTTAATGGACTCTCACAAGAAGGGTGGGTTGGAAACTGAGTTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGCAGTTATGGGGTTGTTGGTTCCGCTGTTGATACCCACACTGATGAGAAGGTTGCAATTAAGAAAATTAACGATGTTTTTGAGCACGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTTAGAGATATTTATGTTGTTTTTGAGTTGATGGAATCTGATCTCCACCAAGTAATTAAGGCCAATGATGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTATCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAATATTTTAGCTAATGCTGATTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCCGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCAGCAATTGATATTTGGAGCATTGGATGCATTTTTGCGGAAATGCTTACTGGAAAGCCACTGTTTCCTGGGAAAAACGTGGTGCACCAACTGGATCTGATGACTGATGTGCTTGGCACACCTTCTTCTGAGTCCATTGCTAGGATTCGGAATGAGAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTTCCCAATGCTGACCCCTTAGCTCTCCGATTGCTTCAACGCTTGCTTGCATTTGATCCCAAAGACCGTCCCACTGCCGAAGAGGCATTAGCTGATCCGTATTTTCAAGGTTTGGCTAACGTGGATCGAGAACCATCAACACAACCAATTTCAAAACTTGAGTTCGAATTTGAGAGAAGAAAGTTAACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATATTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACTAGCTTCATGTACCCAAGTGGTGTTGATCGCTTCAAACGCCAGTTTGCTCATCTAGAGGAACATTATGGCAAGGGTGAAAGAAGCACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGATTCCTGCACCAAAAGATGAAGCTGGACAACACAATGATTTAGAGGGAAGAAATGTTGCTACATCTCTTCAGAGTCCTCCAAAGTCGCAAGGGGATGGTTCCGAAAATGCAAACGGTAACGAACAAAATGGACAAAACAAACCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTTAAACCAAGAAAAGACCTAGAGGAGGAACCAATTTCAGAGACGAATGACGAGGCAGTTGACGGAGTGTCTCATAAGATGTCAGCCTTGCATACCTGA 1944 42.08 MGSGTLVDGVRRWFQRRTSSSSSSTSNSNSNFSSNSDSSDPNLNYPNLHKFDYVDNGGVSGDQLLSSDLRAQSSIAHKRKPLRKQTQLGEGGILEQLPEEEDDDLDYSALKLIKVPKRINHFRNPPPPLPSALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSSESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFQGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERIPAPKDEAGQHNDLEGRNVATSLQSPPKSQGDGSENANGNEQNGQNKPNYSARSLLKSASISASKCIGVKPRKDLEEEPISETNDEAVDGVSHKMSALHT* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2662730 2668666 - CsaV3_1G004260.1 Csa01g00426 514923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00426 647 ProSitePatterns Protein kinases ATP-binding region signature. 162 186 IPR017441 GO:0005524
Csa01g00426 647 MobiDBLite consensus disorder prediction 16 43 - -
Csa01g00426 647 MobiDBLite consensus disorder prediction 562 608 - -
Csa01g00426 647 MobiDBLite consensus disorder prediction 526 647 - -
Csa01g00426 647 ProSiteProfiles Protein kinase domain profile. 156 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00426 647 SUPERFAMILY Protein kinase-like (PK-like) 152 452 IPR011009 -
Csa01g00426 647 Gene3D Phosphorylase Kinase; domain 1 172 493 - -
Csa01g00426 647 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 122 581 - -
Csa01g00426 647 Pfam Protein kinase domain 156 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00426 647 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 122 581 - -
Csa01g00426 647 Gene3D Transferase(Phosphotransferase) domain 1 242 470 - -
Csa01g00426 647 SMART serkin_6 156 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00426 647 ProSitePatterns MAP kinase signature. 191 294 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa01g00426 647 MobiDBLite consensus disorder prediction 76 100 - -
Csa01g00426 647 CDD STKc_TDY_MAPK 155 492 - -
Csa01g00426 647 MobiDBLite consensus disorder prediction 545 560 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00706 Csa01g00426 CCT
Csa01g00706 Csa01g00426 ECH
Csa01g00426 Csa01g00706 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00426 Csa-Chr1:2662730 Csa06g00543 Csa-Chr6:4664720 0 dispersed
Csa01g00484 Csa-Chr1:3147068 Csa01g00426 Csa-Chr1:2662730 4.41E-23 transposed
Csa05g01064 Csa-Chr5:10667094 Csa01g00426 Csa-Chr1:2662730 1.22E-11 transposed
Csa01g00426 Csa-Chr1:2662730 Csa01g00706 Csa-Chr1:4473313 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77741 PF00069 Pkinase 1.60E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00426 - - csv:101219068 1226.85