Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00427 ATGGCTAATTGGATCTCCTCCAAGCTTAAAGCGGCCGAGAGCATTCTCCAGCAGATCGATCAGCAAGCGGCGGAGTCGCTTAAAAAGGGGGAAAAGCCTCCGGCTGTGGATTATTTGGAAGCGGCTGGAAAAGCTGGGGATATTTTGCCTTTGAAGGATCAACTCAAGAAGAAGAATCAAGTAGATAACGATTATCGTAGGAAATTGCGAAGTGATCTAAGTTTGAATGTGAGTAGAAGCCAGGATAATGTGATTTCTGCCTCATCAAAACCCTCACCGTCGTCAAAATCACCTACACTAACGGACCGTGACTGGACCGAACTGCTCGGTACCCCTTCAACTTCGCCTGCATCCCGCAGTAATGGAGCATCTTCAATTCGTGGGGCGAAGAGGGAAAGTCGCAGACCAAGTAATGCAGGTTCAAATATGTCGGTGCTGGATTTCAAGAAAACTCAAAACAGCGCTAATAGCAACAAGTCTGTTGGGGAAAGAAAGAAATTAAACAGGAAGGCAAGTGATGTGGATGAATCTAATGCTTCAGTTTTGTTGGGGACAAGTTCAAGAGTAGATCCAATAAATGACAAAAATGTTACGCATTCTGAAGGTCAAGAAATGGACAAGAAAGAAGCTGCAGGCAATATTTTAGTTGAAGCAAAAAGTTTGGAAAAAAGGGAAGTTGGTGGGAATTTTGATTCCAAGGCTTTTTCTTCAGAGGATTCTATGCTGGCAATAAAAAATGGTCAATCCTCTGAAACAGTGGCAAATACAGATCAAACTAAAAGGATATCTGATACAAATACCATTCTGAAAGATGCTCAAAGTCATCGAGAAAGTGGTGTTTCTGGGAAATATAAATCAGATGAAGTTTCACGTAGTTCTATATCTGATGATGTGAGAAAAGAGTGGACAGGATCTTCAACTAGTGATGGGAGTTCTGGTTCAGATTCAGACTCAGGCTCAGCTTCTGATTCTGAAATTGAACGTGAGAGGGAAGAAATTAGAAGGAGGAGGCAGAAAATTATGGCTGAGAAAGCAGCGGCCAAAGCCTTGGAGGCTATCAAAGAACAGGAAGACTTGGTGGCTAGACTGGAAGGCGAGAAGCAGAGCCTTGAAAAAATACTGGAGGATCGAGCAAGAAAGCAAGCAGAAGAGGCTACAGAGCTGCAGACATCTATGATGGAAACGATGGAGGCTGTTGAGCTTGAGAAGCAGAAGCACAATGAAACCCGTAGAGAAGCCCTTGCAATAATGGCCAAGCTTGAGACTGAAAATGCCTATCTTGCAAGAACCCTTGCTTCTGTACAATGGAATCTTGAGTTGGAGGGTAACCGGGTTGCTGGACTTAGACAGCAGATTGAATTGAAAGAAACGGCTCATGAAGAACTGAAGAGGAGGATTGCAAGCTCTCATCAAGCTGGAACATCAACAAAACCATTGGCTTTTAAAGGAATTGGATTTGAATTGGAGATTCTTGAGGCAGAGCACTCTCACATCACTGATAAAGTCCTCCAATTACAAGAGAAGGGGAAAAAGTTGGAAGAAAACATAGCGTTGATGAGAAAAGAGATGGAGGAACCAACTGAAGTTGAAGTTGAACTCAAGAGAAGGCTTGGCCAGATGACTGACCATTTAATTCAGAAACAAGCTCAGGTGGAGGCACTGTCTTCAGAGAAGGCAACCCTTCTCTTCAGAATTGAGGCCGTGACAAGGCAGCTAGAAGAAAGCAAATCAATGAATATGAGTGACATTTCAAGGGACTTAGAGTCTGGGAAATGGGAACTTTCAGGTTCAAAACTGAGACCGATGTTAGAAGGGAAGATCGACTCGGGGAAGAAACACCTAGGATCATTAATCCTGCAGCTGGATGCAATATATGTAGCAGGAATGGTGTTTATAAGGAGAAACCCTACAGCCAAATTGTGGTCAGTAGTTTACCTTGTATTCCTTCATTTATGGGTACTCTATATTCTCATGTCACACTCACATGTAGACACACACACCAACTCTGGTGCTGTTATTTCCTTGGAAAACATCAATGCCTCTTCACACATGTGA 2055 43.11 MANWISSKLKAAESILQQIDQQAAESLKKGEKPPAVDYLEAAGKAGDILPLKDQLKKKNQVDNDYRRKLRSDLSLNVSRSQDNVISASSKPSPSSKSPTLTDRDWTELLGTPSTSPASRSNGASSIRGAKRESRRPSNAGSNMSVLDFKKTQNSANSNKSVGERKKLNRKASDVDESNASVLLGTSSRVDPINDKNVTHSEGQEMDKKEAAGNILVEAKSLEKREVGGNFDSKAFSSEDSMLAIKNGQSSETVANTDQTKRISDTNTILKDAQSHRESGVSGKYKSDEVSRSSISDDVRKEWTGSSTSDGSSGSDSDSGSASDSEIEREREEIRRRRQKIMAEKAAAKALEAIKEQEDLVARLEGEKQSLEKILEDRARKQAEEATELQTSMMETMEAVELEKQKHNETRREALAIMAKLETENAYLARTLASVQWNLELEGNRVAGLRQQIELKETAHEELKRRIASSHQAGTSTKPLAFKGIGFELEILEAEHSHITDKVLQLQEKGKKLEENIALMRKEMEEPTEVEVELKRRLGQMTDHLIQKQAQVEALSSEKATLLFRIEAVTRQLEESKSMNMSDISRDLESGKWELSGSKLRPMLEGKIDSGKKHLGSLILQLDAIYVAGMVFIRRNPTAKLWSVVYLVFLHLWVLYILMSHSHVDTHTNSGAVISLENINASSHM* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2671328 2677922 - CsaV3_1G004270.1 Csa01g00427 514924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00427 684 Coils Coil 9 29 - -
Csa01g00427 684 Pfam Golgin subfamily A member 5 491 659 IPR019177 GO:0007030
Csa01g00427 684 Coils Coil 403 423 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 227 333 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 80 209 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 276 298 - -
Csa01g00427 684 Coils Coil 323 383 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 135 161 - -
Csa01g00427 684 PANTHER GOLGIN-84 1 664 IPR019177 GO:0007030
Csa01g00427 684 Coils Coil 445 465 - -
Csa01g00427 684 Coils Coil 488 522 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 80 127 - -
Csa01g00427 684 PANTHER GOLGIN SUBFAMILY A MEMBER 5 1 664 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 299 320 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 194 209 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 174 193 - -
Csa01g00427 684 MobiDBLite consensus disorder prediction 233 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00427 - - - csv:101211814 1222.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00427 Csa-Chr1:2671328 Csa02g00098 Csa-Chr2:658368 8.68E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g218 . . . . . . . . . . Cma10g00325 Cma11g00306 Car10g00307 . Sed08g0399 . Cpe04g01375 Bhi02g00130 Tan09g1831 Cmetu05g0278 . . . . Cla06g01426 Cam06g1580 Cec06g1640 Cco06g1632 Clacu06g1541 Cmu06g1496 Cre06g2305 . . . . . . . . . . . . . . . . . Cmo10g00350 Cmo11g00312 . . . . . . . . . . . . . . . . . . . . Lsi06g01293 Csa01g00427 Chy02g02317 Cme02g01690
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005982 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00427 Csa_Chr01 FPKM 2.944304 2.601328 7.07696 7.278581 11.142735 10.201509 10.448504 5.791976 6.38686 6.791321