Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00428 ATGGCGGATTCGTTGGACGAAGACTGTGATTATCTCTTCAAGGCGGTTCTTACGGGCGATTCCGGCGTTGGAAAATCCAATCTCCTCTCTCGTTTCTCCAAAAATGAATTCCGATTCGACTCTAGACCTACGATCGGTGTCGAGTTCGCTTACCGGAATATTAAGGTCGCCGATAAACTCGTCAAAACCCAAATCTGGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCTTATTATCGGGGAGCATTAGGAGCATTACTTGTTTACGACATAACTCGCGTGGCTACATTTGATAACATAAAGAAGTGGCTACGAGAGTTGAGAGAGTTTGGAAATCCGGAAATGGTGATCATTCTAGTTGGAAACAAATGCGACTTACATCAATCGCGAGAAGTACAAGAAGAAGAAGCGCGACATTTGGCCGAGTTGGAGAACTTGTTTTTCATGGAAACTTCTGCCAAAGATAATTTGAATGTGGAAGAGGCATTTCTTGAAATGGTTCGTAGGATCCACGCCATCGCCTCTCAAAAGACATTGGATTTGCATAAAAAATTTGAAAAGCTTGTTGCTTTTCCAAACGGAAAAGAGATTATTAGTATTCATGAAGTAACCCCAACCAAACACAATTCAAATTGTTGCTCTTTGTGA 657 42.16 MADSLDEDCDYLFKAVLTGDSGVGKSNLLSRFSKNEFRFDSRPTIGVEFAYRNIKVADKLVKTQIWDTAGQERFRAITSSYYRGALGALLVYDITRVATFDNIKKWLRELREFGNPEMVIILVGNKCDLHQSREVQEEEARHLAELENLFFMETSAKDNLNVEEAFLEMVRRIHAIASQKTLDLHKKFEKLVAFPNGKEIISIHEVTPTKHNSNCCSL* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2678463 2681734 - CsaV3_1G004280.1 Csa01g00428 514925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00428 218 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Csa01g00428 218 Gene3D - 6 216 IPR027417 -
Csa01g00428 218 SMART ras_sub_4 10 176 - -
Csa01g00428 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 189 IPR027417 -
Csa01g00428 218 ProSiteProfiles small GTPase Ras family profile. 3 218 IPR001806 GO:0003924|GO:0005525
Csa01g00428 218 PANTHER RAS-RELATED PROTEIN RABA6B 3 217 - -
Csa01g00428 218 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Csa01g00428 218 SMART rab_sub_5 13 176 - -
Csa01g00428 218 ProSiteProfiles small GTPase Rab1 family profile. 8 216 - -
Csa01g00428 218 PRINTS Transforming protein P21 ras signature 13 34 - -
Csa01g00428 218 PRINTS Transforming protein P21 ras signature 36 52 - -
Csa01g00428 218 PRINTS Transforming protein P21 ras signature 54 76 - -
Csa01g00428 218 PRINTS Transforming protein P21 ras signature 116 129 - -
Csa01g00428 218 PRINTS Transforming protein P21 ras signature 151 173 - -
Csa01g00428 218 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Csa01g00428 218 CDD Rab11_like 10 174 - -
Csa01g00428 218 SMART ran_sub_2 18 215 - -
Csa01g00428 218 TIGRFAM small_GTP: small GTP-binding protein domain 12 167 IPR005225 GO:0005525
Csa01g00428 218 PANTHER DRAB11-RELATED 3 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00428 K07976 RAB; Rab family, other - csv:101219787 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00428 Csa-Chr1:2678463 Csa04g02308 Csa-Chr4:23620295 1.20E-82 dispersed
Csa01g00428 Csa-Chr1:2678463 Csa01g02302 Csa-Chr1:20141058 2.30E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g216 . . . . . . Bma06g00065 . . . . . . Car11g00283 Sed14g1022 . Cpe04g01374 Bhi02g00132 Tan09g1830 Cmetu04g0229 . Hepe09g0382 . . Cla06g01425 Cam06g1579 Cec06g1639 Cco06g1631 . Cmu06g1495 Cre06g2304 Cone2ag0759 . . . . . . . . . . . . . . . . . Cmo11g00313 . . . . . . . . . . . . . . . . . . . . . Csa01g00428 Chy02g02316 Cme02g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012726 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00428 Csa_Chr01 FPKM 10.566958 12.653019 13.936123 14.264111 11.521667 12.182941 10.533566 22.132816 21.471045 20.948715