Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00431 ATGTGGACGTTAGGTTATGATGACAATGGTGGAGAGTTTTGCTTCTCAGAGGCCACTGCCTTTCATGGCGCTCGTAAGCTTCGACCTCTCGTTCCTCGCCCATTGCTATCCCTTCGTGCCAATGGTCGTCGTCCCAACTTCTCTTCTCAATATTACCACATTGGTAATGTTTTGGATGAGGAAAGGAAGAGAGATCAGTACTTGTTGAATAATGAAAAGAGTTCATCATCATCATCAACAACATCAAGTACTCCAATAGTAGTGAGCTCATCGAGATGGAATCCAACGGTGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGGGGGACAAGAACGCCCTCCGCCGATCAAATCCAACACATAACCGCCCAGCTCCGCCGCTTTGGCAAGATAGAAGGCAAGAATGTGTTTTATTGGTTTCAAAATCACAAGGCTAGAGAACGCCAAAAACGACGCCGTCAAACTGCCGCCGATCAAACCAAATATTCCGAGAGAGAAAAAGAAGAGTACGAAATTGAAGAGACAAAGACGAAGTGCAGGTGGCCGGGAACCCCAACACCACCATCTACTGCTACTCTACTTTCACAGGAATGTACAGAAACACAGAGACGACGAACAAAATTAGTTGAATTGGAAGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGACGAGACATGGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTGTTGTCGAATCCCACAACGAAGACCGAGGACACAACGTCGTCATTGACGACATCAACGACGGGGACAAGGATTCCAAAGCGATGACACTTCAGTTGTTTCCTCTACGAAGTACCAAGTTCTACAAATACGATGGCGAGAGAGAGGGACGACGAGATGGTCGATCTCGATCGGAGATCATGTCTAATTCGGACGTGACCAAAAGCTTCACCTTATCTCCAAGTTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA 1005 45.67 MWTLGYDDNGGEFCFSEATAFHGARKLRPLVPRPLLSLRANGRRPNFSSQYYHIGNVLDEERKRDQYLLNNEKSSSSSSTTSSTPIVVSSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAADQTKYSEREKEEYEIEETKTKCRWPGTPTPPSTATLLSQECTETQRRRTKLVELEEEEEEETRRESVERDETWNCQLINPTRKTQHLNSVVESHNEDRGHNVVIDDINDGDKDSKAMTLQLFPLRSTKFYKYDGEREGRRDGRSRSEIMSNSDVTKSFTLSPSCSFQFFEFLPLKN* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2700556 2703593 + CsaV3_1G004310.1 Csa01g00431 514928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00431 334 MobiDBLite consensus disorder prediction 152 179 - -
Csa01g00431 334 Gene3D - 88 151 - -
Csa01g00431 334 Pfam Homeodomain 90 150 IPR001356 GO:0003677
Csa01g00431 334 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Csa01g00431 334 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 58 334 - -
Csa01g00431 334 Coils Coil 209 229 - -
Csa01g00431 334 SUPERFAMILY Homeodomain-like 90 155 IPR009057 -
Csa01g00431 334 SMART HOX_1 88 155 IPR001356 GO:0003677
Csa01g00431 334 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 58 334 IPR044555 GO:0003700|GO:0099402
Csa01g00431 334 MobiDBLite consensus disorder prediction 149 191 - -
Csa01g00431 334 CDD homeodomain 92 152 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00431 - - - csv:105434593 608.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00712 Csa01g00431 CCT
Csa01g00431 Csa01g00712 ECH
Csa01g00712 Csa01g00431 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00431 Csa-Chr1:2700556 Csa06g01701 Csa-Chr6:14959644 3.98E-28 dispersed
Csa01g02397 Csa-Chr1:21264100 Csa01g00431 Csa-Chr1:2700556 2.94E-29 transposed
Csa02g01931 Csa-Chr2:18135487 Csa01g00431 Csa-Chr1:2700556 1.23E-28 transposed
Csa06g03319 Csa-Chr6:27760270 Csa01g00431 Csa-Chr1:2700556 2.17E-10 transposed
Csa01g00431 Csa-Chr1:2700556 Csa01g00712 Csa-Chr1:4514227 1.42E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014148 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30640 PF00046 Homeodomain 5.60E-19 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00431 Csa_Chr01 FPKM 14.962437 15.066799 21.533007 22.554825 17.313759 14.520907 18.152699 38.371933 36.526348 38.18684