Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00436 ATGATACCGGACGCACCTACCTCGCCAAGGAGCGTTGGCCGGCTGTTGCTAATGGAGAATCTGCTCGGCCTTCTCCGTATTCGCATCGTTCGTGGTGTCAATCTCGCTGTTCGTGATGTTCGCAGTAGCGATCCTTATGTTGTCGTCAAGATGGGAAAGCAAAAATTGAAGACACGGGTGATAAAGAAGGATGTCAATCCTGTATGGAATGAAGATCTAACTCTCTCTGTTAGTGACCCGAACCTTCCCATTAAACTGACGGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATACGCCGAGTTCGATATCAAAGCATTTATGGAAGCTCTGAAGATGAACTTGAAGAATCTTTCCAGTGGAACGACAATAACACGAATGCTACCAGCAAGGCAAAACTGTCTAGCTGAAGAGAGCTGCGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGATTGAGAAACGTCGAATGCGGGGAAGTCGAGATTCAATTGCAGTGGATTAATCTTCCAAACTTCAAAGGATGA 546 45.05 MIPDAPTSPRSVGRLLLMENLLGLLRIRIVRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLSSGTTITRMLPARQNCLAEESCVVWKDGKVVQDIYLRLRNVECGEVEIQLQWINLPNFKG* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2737098 2740038 - CsaV3_1G004360.1 Csa01g00436 514933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00436 181 Gene3D C2 domain 19 179 IPR035892 -
Csa01g00436 181 ProSiteProfiles C2 domain profile. 4 120 IPR000008 -
Csa01g00436 181 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 180 IPR044562 -
Csa01g00436 181 Pfam C2 domain 23 111 IPR000008 -
Csa01g00436 181 SMART C2_3c 24 119 IPR000008 -
Csa01g00436 181 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 11 180 - -
Csa01g00436 181 CDD C2_ArfGAP 26 165 - -
Csa01g00436 181 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 168 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00436 Csa-Chr1:2737098 Csa03g02120 Csa-Chr3:17897273 1.97E-83 dispersed
Csa01g00436 Csa-Chr1:2737098 Csa01g00717 Csa-Chr1:4552877 2.59E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00436 - - csv:101220972 342.428