Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00438 ATGGCTTCCAATTCTGCTAATCTATGGGTACTCTTGGGATTGGGTTTGGCTGGAATCCTTCTTATGACCAAAAAACTTAAGAAAGCGATTAGAGAGGACTTTGGAGCGTTCATCGAGAAATTTCAGCTACTTCCTCCCCCTCAACCTGCCCCTCCTAAAGCTCCTCATCCTCTTACCGGTCTCACCTTCGCTGTTTCCGACGTATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGGCAAAAACACATGATGCAGCTTCTCGGACATCTCCAGTAGTTTCTGCTCTTGTTGAAGGAGGAGCTACTTGCATAGGAAAAACTGTTACCAATGAATTGTCAATGGGTATCAGTGGAGAAAACAAACATTATGAGACGCCCACAAATCCTGCATCACATTCCAAAGTTCCTGGTGGGTCATCCAGTGGAGCTGCTGTTGCAGTAGCTGCTAATCTCGTTGATTTCTCTTTGGGTATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGGCATTTTAGGGTTTCGACCTTCACATGGATCTGTTTCCCAAGTTGGAATTGTACCTGTTTCGTTAAGTCTTGACACTGTTGGAATGTTTGCCAAGGACCCTAATGTCTTGCGTCGTGTTGGCCACGTGCTTTTGCAACTTCCATATGCGGTTCAACGCAATCCTAGACAAATTATTATAGCTGATGATTGCTTTCAACTACTGAAGATACCTGTTGATAGGATTACTCAGGCGGTGACCAAATCTACTGAGAAACTTTTTGGCAGACAAGCATTGAAGCACGAAAATCTTGGAAGCTATTTGAGTTCTAAAGTTCCAAACTTGAAAGAGTTAATTGGGAAAAAGACAAATGGGAATCTGAATTCTGCTTCAATTAGAGTGCTGGCCAATCTGATGCAGACAGTTGAAAGGATTGAATTCAAAGGCAATCATGGGGAATGGATTGACTCGGTGAAACCAGATTTGGATTCTGCTCTAATGGAGCAATTAAATGAGAAGTTGGAGATATCAGATACAATGATTGAAAAGTTCAAGTCTGTTAGAAATGAAATGCGTATGGCTATTAATTCTCTTTTGAAGGATGATGGAGTTCTAGTCATCCCCACCACTGTAGATTCTCCTCCAAAACTAGGTGGAAAGGAGATTTTTTCAGAAGAGTACCAGACTCGTGTATTCAGTTCATTAAGCATTGCTAGCATATCGGGTTGCTGTCAGGTCACCTTGCCACTGGGATTTCACGATAGTTGTCCAGTATCTGTGTCCTTCTTAGCCAGGCATGGGGCAGATCGATTCTTACTAGATATTGTGCAGACCATGTACAGGTCTTTGCAAGAGGAGGCTGAGGCTGCTTCCAAATCCAAATTCTCAAAGAATGCTGTTAGCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGGTAATCAAGCATACAAAGAAAAACAGTGGGAGAAGGCTATTGGTTGTTATACCGAAGCCATCAAACTCAACAGCAGAAATGCTACCTATTACAGTAATAGGGCTGCAGCATATTTAGAACTTGGACGGTTTCACCAAGCAGAGGCAGATTGCAGTAAAGCTATTGACCTGGATAAAAAGAATGTTAAGTCGTATTTACGAAGGGGTACAGCGAGAGAGATGCTTGGATTTTACAAGGAAGCAATTGAAGATTTTAGTCATGCCCTTGTTCTTGAACCAACAAACAAAAGAGCGTCAATATCTGCAGAGAGATTAAGAAAGCTATTCACAAGTTAA 1776 42.17 MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTGLTFAVSDVFEIEGHVTGFGHPDWAKTHDAASRTSPVVSALVEGGATCIGKTVTNELSMGISGENKHYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCFQLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASIRVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMRMAINSLLKDDGVLVIPTTVDSPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGFHDSCPVSVSFLARHGADRFLLDIVQTMYRSLQEEAEAASKSKFSKNAVSQEQSAEIAKEKGNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFYKEAIEDFSHALVLEPTNKRASISAERLRKLFTS* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2746604 2757241 - CsaV3_1G004380.1 Csa01g00438 514935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00438 591 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Csa01g00438 591 Gene3D Tetratricopeptide repeat domain 447 589 IPR011990 GO:0005515
Csa01g00438 591 SMART tpr_5 508 541 IPR019734 GO:0005515
Csa01g00438 591 SMART tpr_5 542 575 IPR019734 GO:0005515
Csa01g00438 591 SMART tpr_5 474 507 IPR019734 GO:0005515
Csa01g00438 591 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515
Csa01g00438 591 PANTHER AMIDASE 1 1 590 - -
Csa01g00438 591 Pfam TPR repeat 481 522 - -
Csa01g00438 591 SUPERFAMILY Amidase signature (AS) enzymes 56 446 IPR036928 -
Csa01g00438 591 Gene3D Amidase signature (AS) domain 40 446 IPR036928 -
Csa01g00438 591 Pfam Amidase 55 441 IPR023631 -
Csa01g00438 591 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Csa01g00438 591 MobiDBLite consensus disorder prediction 122 141 - -
Csa01g00438 591 SUPERFAMILY TPR-like 472 579 IPR011990 GO:0005515
Csa01g00438 591 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00438 - - - csv:101221204 1115.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00438 Csa-Chr1:2746604 Csa07g00557 Csa-Chr7:4059870 0 dispersed
Csa03g02640 Csa-Chr3:24902075 Csa01g00438 Csa-Chr1:2746604 9.33E-09 dispersed
Csa01g00438 Csa-Chr1:2746604 Csa06g02410 Csa-Chr6:21518781 7.39E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00438 Csa_Chr01 FPKM 20.963991 24.252522 4.276112 4.425048 0.0 0.465542 0.358042 9.967355 11.26829 10.309193