Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00439 ATGAGGAGATCTTCCTCCATAGCTTCATCCTTCCTCTCCCGCTCAATCTCCACTTCTCATGGCTCTTCCGCCATCTCCACTCACCGTCTTCTACAAGCCGCCCTCTTCAGTTCCACCTCCCACAACCACCGCCGATGGTTCTCCTCTCTCCTCGATTCCTTTTCCGGTCGCTCTACCCGAGCTGTATCCCTTGGCGTCGTTGGTGCTTTTGCTTCTATAGCCGCTGCTGTTTCCATGTCCCAGGAGGTTTATGCCGAGGAGCGCTTGCGCCAAGACTTGATTCCTAAGGAGGTTGTGCTCTATCAATATGAAGCATGTCCGTTTTGTAATAAAGTTAAAGCGTTTCTTGACTACTACGATATTCCATATAAAGTCGTCGAGGTCAATCCACTTAGTAAGAAAGAAATTAAATGGTCGGATTATAAGAAGGTGCCTATACTGGTGGTTGATGGTGAACAGTTGGTTGACTCGTCAGCCATTATCGACCAGTTGAGCCACAGGGTTTTGCCAGATAAGAATGTTTCTTCTGTCTCTGAAGATGATGAAGAGACAAAGTGGCGCAGATGGGTAGATAATCACTTGGTACATATGTTATCACCAAATATATATCGAAATACTTCTGAAGCCCTTGAATCATTTGACTACATTACTAGTAATGGTAATTTTGGCTTTGCCGAAAAGATTTCTGTAAAGTATGCTGGAGCCGCCGCTATGTACTTCGTGTCAAAGAAACTAAAGAAGAAATATAATATTACTGATGAGCGTGCAGCATTGTACGAAGCAGCAGAAACGTGGGTAGATGCTTTGGCTGGACGGGACTTCCTAGGAGGCTCAAAACCTAATCTAGCTGATCTTGCGGTGTTTGGGGTGTTAAGACCCATCCGTTACTTGAGGTCTGGTAAAGACATGGTGGAGCACACACGGATCGGCGAATGGTACACCAGAATGGAGAGCGCTGTTGGAGACTCCTCCAGGATCAGATCCTAA 987 46.1 MRRSSSIASSFLSRSISTSHGSSAISTHRLLQAALFSSTSHNHRRWFSSLLDSFSGRSTRAVSLGVVGAFASIAAAVSMSQEVYAEERLRQDLIPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPLSKKEIKWSDYKKVPILVVDGEQLVDSSAIIDQLSHRVLPDKNVSSVSEDDEETKWRRWVDNHLVHMLSPNIYRNTSEALESFDYITSNGNFGFAEKISVKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALAGRDFLGGSKPNLADLAVFGVLRPIRYLRSGKDMVEHTRIGEWYTRMESAVGDSSRIRS* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2758440 2763313 - CsaV3_1G004390.1 Csa01g00439 514936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00439 328 ProSitePatterns Glutaredoxin active site. 100 116 IPR011767 -
Csa01g00439 328 SUPERFAMILY GST C-terminal domain-like 178 320 IPR036282 -
Csa01g00439 328 CDD GST_N_mPGES2 97 168 - -
Csa01g00439 328 Pfam Glutathione S-transferase, N-terminal domain 100 167 IPR004045 -
Csa01g00439 328 SUPERFAMILY Thioredoxin-like 97 192 IPR036249 -
Csa01g00439 328 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 327 - -
Csa01g00439 328 Gene3D - 176 326 - -
Csa01g00439 328 SFLD Prostaglandin E synthase like.1 22 326 IPR034334 GO:0050220
Csa01g00439 328 PANTHER PROSTAGLANDIN E SYNTHASE 2-RELATED 1 327 - -
Csa01g00439 328 SFLD Prostaglandin E synthase like 22 326 - -
Csa01g00439 328 Pfam Glutathione S-transferase, C-terminal domain 253 318 IPR004046 -
Csa01g00439 328 CDD GST_C_mPGES2 179 321 IPR034335 -
Csa01g00439 328 ProSiteProfiles Glutaredoxin domain profile. 86 184 - -
Csa01g00439 328 Gene3D Glutaredoxin 88 170 - -
Csa01g00439 328 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 96 172 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00439 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101221439 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00439 Csa-Chr1:2758440 Csa02g01709 Csa-Chr2:16847868 2.64E-137 dispersed
Csa01g00439 Csa-Chr1:2758440 Csa01g00542 Csa-Chr1:3547658 6.46E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g197 . . Bda06g00822 Bda15g00512 Bpe12g00695 . . Bma12g01245 . . Cma10g00331 Cma11g00316 Car10g00313 Car11g00291 . . Cpe04g01366 Bhi02g00150 Tan09g1812 . . Hepe09g0396 . . Cla06g01416 Cam06g1569 Cec06g1629 Cco06g1621 Clacu06g1531 Cmu06g1485 Cre06g2294 . . . Cone19ag0335 . . . . Blo13g00171 Blo15g00058 . . Bpe07g01049 . . Bma08g00057 . Cmo10g00357 . . . . . . . . . . . . . . . . . . . . . Lsi06g01278 Csa01g00439 Chy02g02306 Cme02g01677
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00439 Csa_Chr01 FPKM 2.745646 3.188691 2.085933 2.538974 2.30677 2.679382 2.559738 3.874784 3.868888 4.507446