Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00440 ATGGCAGCTCCCAAGTTCCTATACATGGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCATTCCTTTTCCCCAGAAGACTCCCCTCAAAGTTCATATCTTTCATGAAATGCAGTTCTTCTACCGTACTTGATTCCGTCGGCAGCGGCGGCGCTGATGCTCCCCAACCACACTCCACCCTCACCCACCACCCATGGCCTGAATGGGTTTCCTTCGTCGACGGCCTGAAAACCAAAGGTTACTTGATCGAACCTCCTTCAGAAGATGCAACTGGAGATGGGACCGGTGGTGAAGCAGCTACGCCACCCGTGATTGATTACAGCGACATGAACGTGTTGAAGGATGCTTGTGTCAGCTTTGCGCGCGACCGCTTTGATATTTTCAAGTCGTTGTCCACAGATGATATTCAAACGATTGTGAAGGATGGATGCCCCAATCTCCTCCGGAAAGCTGTTAATTCAGCTAAAAGGTTGAGGGCTTATGTGCAACTAGATGAAGGAGACGTTTGTAGTACTTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTTTAAAGCAAACAGACGGAACTGCAAGAACTGTGGATGTAGCTCGATTATTGCTGGCCTATGCATTGGATCCACTTGTTTTGTCTGGAGGGGATAAACCTTCGGGTAGAGAGCATGTCGAAGTCTCTGTGAGGAAATTGCTTTCTGACTTATCAGAACTTAGTGAAAAACCCATTGATCCAGCAGCAGTGAGGGAGGTTACAAAACCTCCCACAAGAAAAGAAAAATCATCAAAATTTACAGAAGATGCCTCAACTCGAGATGTTGAGATGAAGAGAGGGGATTGGATGTGTACAAAATGCAATTTTTTGAATTTTTCAAGGAACAGAACATGTTTAAAATGTAACGAAGATGGTCCTAAAAGAGTACGGGAAAATGATATTGAAATGAAGAGTGGAGACTGGATTTGTCCAGAATGCAAATTTATGAACTTCTCAAGAAATATTCGCTGCATAAAGTGCAAAACAGAGGGGCCAAAGAAGGTTAATGTCGAACAAGCTGAAATGAAGAAGGGAGATTGGGTCTGCCCGCAATGTTCATTCATGAACTTTGCCAGTAACAAGAAATGTCTTCGTTGCCGAGAACTTCGTCCGAAGAGGGAATTGAATCGAGGAGAATGGGAATGCCCCATGTGTGCTTATGTGAATTTCAGAGGAAACATGAGCTGCCGCAAGTGCAATGCTGAGCGTCCTGAACAAGAAATAAGTGACGAGTACGAGGAGCAACTATGGGAGTCACCTCGTGAAAACAGACGTCCAAGGCCAACAGGGCGTGATTAA 1338 45.44 MAAPKFLYMGTAISRTTSRALSPFLFPRRLPSKFISFMKCSSSTVLDSVGSGGADAPQPHSTLTHHPWPEWVSFVDGLKTKGYLIEPPSEDATGDGTGGEAATPPVIDYSDMNVLKDACVSFARDRFDIFKSLSTDDIQTIVKDGCPNLLRKAVNSAKRLRAYVQLDEGDVCSTCNLRGSCDRAYVILKQTDGTARTVDVARLLLAYALDPLVLSGGDKPSGREHVEVSVRKLLSDLSELSEKPIDPAAVREVTKPPTRKEKSSKFTEDASTRDVEMKRGDWMCTKCNFLNFSRNRTCLKCNEDGPKRVRENDIEMKSGDWICPECKFMNFSRNIRCIKCKTEGPKKVNVEQAEMKKGDWVCPQCSFMNFASNKKCLRCRELRPKRELNRGEWECPMCAYVNFRGNMSCRKCNAERPEQEISDEYEEQLWESPRENRRPRPTGRD* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2765336 2769473 + CsaV3_1G004400.1 Csa01g00440 514937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00440 445 ProSiteProfiles Zinc finger RanBP2 type profile. 356 385 IPR001876 -
Csa01g00440 445 PANTHER ZINC FINGER PROTEIN 341 441 - -
Csa01g00440 445 PANTHER ZINC FINGER PROTEIN 58 308 - -
Csa01g00440 445 PANTHER ZINC FINGER PROTEIN 302 345 - -
Csa01g00440 445 ProSitePatterns Zinc finger RanBP2-type signature. 360 379 IPR001876 -
Csa01g00440 445 ProSiteProfiles Zinc finger RanBP2 type profile. 317 346 IPR001876 -
Csa01g00440 445 SMART zf_4 391 415 IPR001876 -
Csa01g00440 445 SMART zf_4 358 382 IPR001876 -
Csa01g00440 445 SMART zf_4 280 304 IPR001876 -
Csa01g00440 445 SMART zf_4 319 343 IPR001876 -
Csa01g00440 445 SUPERFAMILY Ran binding protein zinc finger-like 311 345 IPR036443 -
Csa01g00440 445 Gene3D - 386 420 - -
Csa01g00440 445 Gene3D - 269 308 - -
Csa01g00440 445 Gene3D - 309 347 - -
Csa01g00440 445 Gene3D - 348 385 - -
Csa01g00440 445 SUPERFAMILY Ran binding protein zinc finger-like 352 385 IPR036443 -
Csa01g00440 445 ProSitePatterns Zinc finger RanBP2-type signature. 393 412 IPR001876 -
Csa01g00440 445 ProSiteProfiles Zinc finger RanBP2 type profile. 278 307 IPR001876 -
Csa01g00440 445 MobiDBLite consensus disorder prediction 427 445 - -
Csa01g00440 445 Pfam Zn-finger in Ran binding protein and others 317 345 IPR001876 -
Csa01g00440 445 Pfam Zn-finger in Ran binding protein and others 279 301 IPR001876 -
Csa01g00440 445 Pfam Zn-finger in Ran binding protein and others 356 380 IPR001876 -
Csa01g00440 445 SUPERFAMILY Ran binding protein zinc finger-like 271 306 IPR036443 -
Csa01g00440 445 MobiDBLite consensus disorder prediction 416 445 - -
Csa01g00440 445 ProSiteProfiles Zinc finger RanBP2 type profile. 389 418 IPR001876 -
Csa01g00440 445 PANTHER ASPARAGINE-RICH PROTEIN 341 441 - -
Csa01g00440 445 PANTHER ASPARAGINE-RICH PROTEIN 58 308 - -
Csa01g00440 445 PANTHER ASPARAGINE-RICH PROTEIN 302 345 - -
Csa01g00440 445 MobiDBLite consensus disorder prediction 250 272 - -
Csa01g00440 445 SUPERFAMILY Ran binding protein zinc finger-like 388 419 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00440 - - - csv:101221680 905.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00440 Csa-Chr1:2765336 Csa05g01992 Csa-Chr5:23225767 3.54E-65 dispersed
Csa01g00440 Csa-Chr1:2765336 Csa02g00172 Csa-Chr2:1196608 9.54E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00440 Csa_Chr01 FPKM 0.724708 0.734904 10.13032 10.19812 0.736815 1.225348 0.786605 14.184467 13.214909 14.185662