Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00444 ATGGCGTTCGTTGGGTTTATTGGCTTTGACGATTTTAGCTTCCAATTAGCTACTTCACTAATCCGTGCTGGTTACAGAGTCAAAGGTTTTGAGATAAATCAGGCGTGGAAAGATAAATTTTTGAAGTCAGGTGGAATAAACTGTGCCAGTATTGTAGAGGCAGGGGAAGATGTTGCCGCATTGTTTATATTGAATAGTCATTTGAATGTGATTAATGATTCAACTTTTGGCAATGCTCTCAGAGGGTTGCAAAAGGATGTTGTTGTTGTCCTTGTCAGTTCAACTCCACTGAGGAATGATGTCCAGAACTTGGAAAAACTTTTTACAGTTGATTACGAGATACACAATCTTGTTGAAGCATATGTCTCTAAGGGTGTTTCTGAAGCACCGGATGGTCAGCTTTTGACAGTAGCCTCTGGAAGGGCAACTGCAATTTCTAGAGCTCGACCTTTTTTATCAGCTATGTGTGAAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGCAAGTAAAACAAATATGGTAATTGAGCTCCTGAAAGGAATTCATTTCGTTGCTTCCTTGGAAGCTATTTGCCTGGGTGTTAAAGCTGGAATTCACCCCTGGATAATCTACGACATTATTTCGAATGCTGCTGGGAATTCATGGGTTTTCAAGAACTATGTTCCCCACTTGTTGAAGGGTGATGTTGGACCTGAGTTTTTGAGAAGTTTGGTTCAAGATATGGGGATTGTCATGGATAAGGCGAAGTCACACACTTTTCCTCTTCCACTCCTAGCAGTTACTCATCAGCAACTTATGTTGGGATCTTCTCACGGCTATGGAGATGAGGATGTCTTGTTAGAACAGGCATGGAAAAGCGCATATGGAGTAAGTATTTCAGATGCAGCTAATACAGAAGTTTACAACCCTGAGCAACTAGCCGATGAAATAACTTCTAAATCAAGTTCTGTTAAACGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCAACTTATCCGATCAGATTTTTGTGTGATTGGTTATGATGTGTTTAAACCAACTCTAACTAAATTCACTGATGCTGGTGGCTTGACTGGGAACTCGCCTGCAGAAGTTAGTAAAGATGTTGAAGTGCTCGTAATTATGGTGACAAATGAAACACAAGTGGAGAGCGTTCTGTATGGGGAAGCTGGGGCTATCTCTGCGCTTCCATATGGAGCTTCGATTATTCTATCATCTACAGTTTCTCCTGGATATGTGAGCCAACTGGAACAGCGCTTGGGAAATGAGGGAAAAAATCTGAAATTGGTTGATGCTCCTGTTTCTGGCGGTGTTCAAAGGGCCTCAAAGGGAGCCCTTACGATAATGGCTTCTGGGACAAAGGAAGCTCTTAGGAGCACTGGTTCAGTCCTCTCAGCCTTAAGTGAGAAGCTTTATGTAATTAAAGGAGTTTGCGGGGCAGGAAGTGGTGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCAGGTGCAGAGGCAATGGCATTTGGAGCTCGACTTGGTCTCAATACTCGAATTTTATTTGAAGTCATCCTAAACAGTCAGGGAACGTCCTGGATGTTTGAAAACCGAGTTCCACATATGCTGGACGATGATTACATACCATACTCTGCACTTGACATCTTTGTGAAAGATCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTACACTTATCAGTGACTGCACACCAATTGTTTCTGGCAGGTTCTGCTGCTGGTTGGGGTCGTCAAGATGATGCTGGAGTAGTAAAGGTTTATGAGACACTTACAGGTGTCAAGGTTAAAGGAAAGCCTCCCACTCTTAAGAAAGAAGTTGTATTGAGGTCTCTTCCACCTGAATGGCCGGAAGATGTAATTGGTGATATTCAACAACTAAATGAAAGAAATTCAAAAATTTTGGTTGTGCTGGACGATGATCCTACAGGAACCCAAACTGTTCATGACATAGATGTTTTAACTGAATGGACTCTTGATTCACTTATTGAGCAATTTCGTAAAAAGCCCCAATGTTTTTTTATATTGACCAACTCAAGGTCATTGAGCTCTGAAAAGGCTGGGGCATTGGTTGAACAAATCTGCACTAATTTACGTGCTGCATCTGAGAGTGTCGAGTACAGTGACTACATGGTTGTTTTGAGAGGCGATTCAACTTTACGAGGTCACTTTCCTGAGGAAGCCGATGCTGCTATTTCTGTGTTAGGTGTAGTGGATGCATGGATCATCTGCCCATTCTTTTTCCAAGGAGGCCGTTACACTGTTGACGATATACACTATGTTGCAGATTCTGATGAGCTTATTCCTGCAGGGGACACTGAGTTTGCAAAAGATGCCACTTTTGGTTATAAATCTTCAAATCTCCGTGAGTGGGTTGAAGAGAAAACGGCTGGACGCATACAAGCTGGCACTGTCGCCTCCATTTCTATTCAACTTTTAAGAAAGGGTGGTCCAGATGCTGTTTGGGAGTACCTATGTAGCTTAGAGAAGGGAAGGGCATGTATAGTTAATGCCGCTAGTGAGAGGGATATGGCCGTTTTTGCAGCTGGAATGATTAAGGCAGAAATGAAGGGCAAGAATTTCTTATGTCGCACTGCTGCTAGTTTTGTATCAGCCAGGGTTGGAATCACTCCAATACCTCCTCTTTTGCCTAAGGATGTTGGAATCGATAAAGAGAGAAATGGTGGTCTTATTATTGTGGGTTCATATGTTCCAAAAACTACCAAACAGGTTCAAGAGCTGAAGTTGCGATGTGGCCTGTTTTTAAGATGTATTGAGGTTTCTGCTGCTAAACTTTCCATGAGTACAGAGAAAGAGAGGGAGGAGGAAATTAAAAGAGCAGCTATGTTGGCAGATATTTATCTCAAGGCTCATAAAGATACTCTAATTATGACTAGTAGAGAACTTATCACGGGAAAAAGTCCTCTGGAGAGTTTAGAAATCAACGTCAAAGTAAGTGCAGCACTGGTGGAAATAGTTCAACGGATTAATACAAGACCACGCTACATCCTTGCAAAGGGTGGAATTACCTCATCAGACATTGCTACAAAGGCTCTTGGAGCAAAATGTGCTAGGATAGTTGGACAGGCCCTCTCTGGGGTTCCCTTGTGGCAACTAGGCCATGAGAGTAGACATCCTGGAGTTCCGTACATTGTTTTCCCAGGTAATGTTGGAAACAGTGAAGCACTAGCAGAAGTAGTCAGTGCTTGGACTCTTCCTGCCAAACTTTCCTCCTCAAAAGATATTCTTCTTAGTGCAGAACGAGGTGGGTATGCAGTGGGAGCATTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCAGCTGAAGAACAACAGAGTCCTGCCATATTACAGATTCATCCAGGTGCCTTAAAGCAAGGAGGTCTCTCTTTGGTTTCATGCTGTATTGCTGCTGCTGAACGAGCCAGTGTACCAATTACTGTTCACTTTGATCACGGAAATTCATTGCAAGACCTGTTAGAAGCTATTGAATTGGGATTTGATTCGGTAATGGCAGATGGTTCACATCTTCCATTTAAGGAAAATATTGCCTACACAAAGTTCATTTCTTCCTTGGCTCAATCAAAGAACATGCTAGTGGAAGCTGAACTTGGAAGATTATCAGGAACAGAAGATGACTTGACTGTCGAAGATTATGACGCAAGGCTGACTGATGTGTCGCAGGCTCAACAGTTCATCGAGGAGACTGGTATAGATGCTCTAGCAGTATGCATTGGTAATGTCCATGGAAAATATCCACCAGGCGGCCCGAACCTCAAACTCGATCTGCTCAAGGACTTGCATGCTTTGACCTCAAAAAAAGAAGTCTTCCTGGTGCTCCATGGAGCTTCAGGTTTGCCCGAGAACCTCATAAAGGCTTGTATCAAGAATGGAGTGAGAAAGTTCAACGTAAACACCGAGGTTCGGAAAGCATACTTGGATTCACTGAATACTCCTAGTAAAGATTTAGTCCATGTGATGGAATCAGCCAAAGAATCCATGAAAGCTGTGATTGCAGAGAAGATGCATCTATTTGGTTCTGCAGGAAAAGCATCTTGA 4119 42.63 MAFVGFIGFDDFSFQLATSLIRAGYRVKGFEINQAWKDKFLKSGGINCASIVEAGEDVAALFILNSHLNVINDSTFGNALRGLQKDVVVVLVSSTPLRNDVQNLEKLFTVDYEIHNLVEAYVSKGVSEAPDGQLLTVASGRATAISRARPFLSAMCEKLFIFEGEVDAASKTNMVIELLKGIHFVASLEAICLGVKAGIHPWIIYDIISNAAGNSWVFKNYVPHLLKGDVGPEFLRSLVQDMGIVMDKAKSHTFPLPLLAVTHQQLMLGSSHGYGDEDVLLEQAWKSAYGVSISDAANTEVYNPEQLADEITSKSSSVKRVGFIGLGAMGFGMATQLIRSDFCVIGYDVFKPTLTKFTDAGGLTGNSPAEVSKDVEVLVIMVTNETQVESVLYGEAGAISALPYGASIILSSTVSPGYVSQLEQRLGNEGKNLKLVDAPVSGGVQRASKGALTIMASGTKEALRSTGSVLSALSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFEVILNSQGTSWMFENRVPHMLDDDYIPYSALDIFVKDLGIVSRECASHKVPLHLSVTAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVKGKPPTLKKEVVLRSLPPEWPEDVIGDIQQLNERNSKILVVLDDDPTGTQTVHDIDVLTEWTLDSLIEQFRKKPQCFFILTNSRSLSSEKAGALVEQICTNLRAASESVEYSDYMVVLRGDSTLRGHFPEEADAAISVLGVVDAWIICPFFFQGGRYTVDDIHYVADSDELIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQAGTVASISIQLLRKGGPDAVWEYLCSLEKGRACIVNAASERDMAVFAAGMIKAEMKGKNFLCRTAASFVSARVGITPIPPLLPKDVGIDKERNGGLIIVGSYVPKTTKQVQELKLRCGLFLRCIEVSAAKLSMSTEKEREEEIKRAAMLADIYLKAHKDTLIMTSRELITGKSPLESLEINVKVSAALVEIVQRINTRPRYILAKGGITSSDIATKALGAKCARIVGQALSGVPLWQLGHESRHPGVPYIVFPGNVGNSEALAEVVSAWTLPAKLSSSKDILLSAERGGYAVGAFNVYNLEGVQAVVAAAEEQQSPAILQIHPGALKQGGLSLVSCCIAAAERASVPITVHFDHGNSLQDLLEAIELGFDSVMADGSHLPFKENIAYTKFISSLAQSKNMLVEAELGRLSGTEDDLTVEDYDARLTDVSQAQQFIEETGIDALAVCIGNVHGKYPPGGPNLKLDLLKDLHALTSKKEVFLVLHGASGLPENLIKACIKNGVRKFNVNTEVRKAYLDSLNTPSKDLVHVMESAKESMKAVIAEKMHLFGSAGKAS* 1373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2782345 2798659 - CsaV3_1G004440.1 Csa01g00444 514941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00444 1372 Gene3D - 482 614 IPR013328 GO:0016491
Csa01g00444 1372 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 485 605 IPR029154 GO:0051287
Csa01g00444 1372 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 279 IPR029154 GO:0051287
Csa01g00444 1372 Pfam Sugar-binding N-terminal domain 652 889 IPR010737 -
Csa01g00444 1372 Gene3D - 904 1087 IPR042213 -
Csa01g00444 1372 Gene3D - 168 284 IPR013328 GO:0016491
Csa01g00444 1372 Gene3D Aldolase class I 1089 1372 IPR013785 -
Csa01g00444 1372 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 282 1296 - -
Csa01g00444 1372 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 4 278 - -
Csa01g00444 1372 Pfam Nucleotide-binding C-terminal domain 914 1080 IPR031475 -
Csa01g00444 1372 Pfam Fructose-bisphosphate aldolase class-II 1096 1370 IPR000771 GO:0005975|GO:0008270|GO:0016832
Csa01g00444 1372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 319 483 IPR036291 -
Csa01g00444 1372 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 320 478 IPR006115 GO:0050661
Csa01g00444 1372 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 4 160 IPR006115 GO:0050661
Csa01g00444 1372 Gene3D - 2 163 - -
Csa01g00444 1372 Gene3D - 313 481 - -
Csa01g00444 1372 CDD TBP_aldolase_IIB 1097 1369 IPR000771 GO:0005975|GO:0008270|GO:0016832
Csa01g00444 1372 PANTHER ALDOLASE-RELATED 282 1296 - -
Csa01g00444 1372 PANTHER ALDOLASE-RELATED 4 278 - -
Csa01g00444 1372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 159 IPR036291 -
Csa01g00444 1372 TIGRFAM cbbA: ketose-bisphosphate aldolase 1094 1371 IPR000771 GO:0005975|GO:0008270|GO:0016832
Csa01g00444 1372 Gene3D - 651 890 IPR037051 -
Csa01g00444 1372 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 485 612 IPR008927 -
Csa01g00444 1372 SUPERFAMILY Aldolase 1095 1371 - -
Csa01g00444 1372 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 168 279 IPR008927 -
Csa01g00444 1372 SUPERFAMILY YgbK-like 652 1084 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00444 - - - csv:101221907 2638.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00444 Csa-Chr1:2782345 Csa01g02623 Csa-Chr1:23212614 6.40E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00444 Csa_Chr01 FPKM 6.592783 7.067144 2.230771 2.35304 17.741032 16.060703 17.296333 0.865938 0.940174 0.468736