Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00459 ATGGCAAAGCCATTTCCGTCGTCGTCGTCGCCTGCTACCGGCTTCATCATTCTCATTGTCATTTCATTAGAGATTATTGTTTCTTGTAGTGCTTCCACCGATGCGGATGCGCTTCTCAAGTTCAAGAGCTCTCTTGATATTAGTAGCAACAACGACGCATTGGGGAATTGGGGTTCGGGTGGGTCTTCATCTTCCCCTTGCTCCGGCAATAAGGCGAATTGGGTCGGTATTCTTTGTGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAGTATGGGGCTCAAAGGGAATATTGACATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACACTCAGTCTTATGAATAATGAGTTTGAAGGTTCTTTGCCTGATATTAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGGAATCACTTTTCAGGGAATATTCCTGGTTATTTTTTTTCAAATATGTTGTCTTTGAAGAAGGTTCATTTGGCTAATAATGAATTGGAAGGTCAAATTCCTTGGTCTTTGGTTGAGTTGCATCGTTTGTTGGAGTTAAGGCTTGAAGGAAACAAATTTTCTGGTCAAATCCCCAATTTTCAACAAAACACTATCAAGGCCTTTAATCTCTCTAATAATGATCAACTTCATGGCCAAATCCCACCAGCTCTCTCCCGCTTGGATCCGTCCTCTTTTTCAGGCATTGAAGGTTTATGTGGAGCACCACTTAACAAACCATGCAACGCCTCAAAGGTGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTTCTTGCCATTGGTGCAGGAATAGTCATCCTGAGCCGTTGTAACCAATCCTCGTCTAACAATGAGGATCCAGCCCATGGAAAATCTCCAAGTGCTAATGAGCAAGATCAAGGAGCCGGGGTGAAGTCACCAGATCGTGGCTCAAGCAATGGAAGCGTGACAGGAAAACGGTCAGCCGATAGTGCTAAATTATCATTTGTAAGAGAGGATTCAGAGAGGTTTGATTTATCAGATTTGCTTAAAGCCTCAGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAAGCAGCTTTGACCAATGGACCTGTGATGGTTGTAAAGAGGTTTAAGCAAATGAACAACGTGGATAGAGAGGAATTCCAAGAACACATGAGAAGAATTGGAAGATTGAAACACACTAATTTGCTTCCTCTTGTGGCTTACTATTACAAAAAAGAAGAAAAACTTCTCATAACAGATTATATTGAGAAGGGCAGCTTGGCTGTTCACCTTCATGGACATAAAGCTGTGGGACAACCAGCCCTGGATTGGCCTGCAAGATTGAAGATCGTCAAAGGCGTTGGAAAGGGTCTTCGATATCTATACAGTGAGCTTCCAAGTTTGATAACCCCACACGGCCATCTCAAGTCCTCAAATGTACTTATAAAGGCAAATTATGAGCCCCTTCTTTCAGACTACGGCCTAATCCCGGTCGTGAACCAAGAGCACGCCCATGAGCTAATGGTGGCCTACAAATCCCCGGAGTACTCGCAACAAGGTCGCATTACAAAGAAGACAGACGTATGGAGTTTTGGGCTATTGATCCTAGAAATTCTATCAGGTCAATTCCCAGCCAACTTCTTGCATCAGAACAAGAGTGGGGAGGAGGAAGATTTGGCAAGTTGGGTAAAATCAATTCCTGAAAAAGAATGGAACACCCGAGTATTTGATAAGGAAATGGGACCAAACAAGAGCAGTGAGGGTGAAATGATGAAGCTTCTAAGGATTGCAATGGCATGTTGCGAAAGCGACTTCGAGAAACGGTTGGATTTACGAGAAGCTGTGGAGAAGATTGATGAAGTGAAAGAAAAAGATGGGGATGAAGACTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTAA 1968 42.94 MAKPFPSSSSPATGFIILIVISLEIIVSCSASTDADALLKFKSSLDISSNNDALGNWGSGGSSSSPCSGNKANWVGILCEKGNVWGLKLESMGLKGNIDIESLEGVPHLRTLSLMNNEFEGSLPDIKRLGALKSLYLSRNHFSGNIPGYFFSNMLSLKKVHLANNELEGQIPWSLVELHRLLELRLEGNKFSGQIPNFQQNTIKAFNLSNNDQLHGQIPPALSRLDPSSFSGIEGLCGAPLNKPCNASKVPSIGSIIMVSIAVTLALLAIGAGIVILSRCNQSSSNNEDPAHGKSPSANEQDQGAGVKSPDRGSSNGSVTGKRSADSAKLSFVREDSERFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHTNLLPLVAYYYKKEEKLLITDYIEKGSLAVHLHGHKAVGQPALDWPARLKIVKGVGKGLRYLYSELPSLITPHGHLKSSNVLIKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWSFGLLILEILSGQFPANFLHQNKSGEEEDLASWVKSIPEKEWNTRVFDKEMGPNKSSEGEMMKLLRIAMACCESDFEKRLDLREAVEKIDEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2909428 2913206 - CsaV3_1G004590.1 Csa01g00459 514956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00459 655 MobiDBLite consensus disorder prediction 285 323 - -
Csa01g00459 655 Pfam Leucine rich repeat N-terminal domain 32 79 IPR013210 -
Csa01g00459 655 Pfam Protein tyrosine and serine/threonine kinase 351 618 IPR001245 GO:0004672|GO:0006468
Csa01g00459 655 Gene3D Ribonuclease Inhibitor 153 246 IPR032675 -
Csa01g00459 655 Gene3D Transferase(Phosphotransferase) domain 1 423 641 - -
Csa01g00459 655 ProSiteProfiles Protein kinase domain profile. 347 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00459 655 SUPERFAMILY Protein kinase-like (PK-like) 351 619 IPR011009 -
Csa01g00459 655 Gene3D Phosphorylase Kinase; domain 1 314 422 - -
Csa01g00459 655 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 12 633 - -
Csa01g00459 655 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Csa01g00459 655 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 633 - -
Csa01g00459 655 Gene3D Ribonuclease Inhibitor 33 152 IPR032675 -
Csa01g00459 655 SUPERFAMILY L domain-like 65 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00459 Csa-Chr1:2909428 Csa03g04418 Csa-Chr3:38547001 0 dispersed
Csa04g01851 Csa-Chr4:18200725 Csa01g00459 Csa-Chr1:2909428 1.73E-152 transposed
Csa01g00459 Csa-Chr1:2909428 Csa01g00727 Csa-Chr1:4605115 1.17E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77743 PF07714 PK_Tyr_Ser-Thr 5.70E-30 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00459 - - csv:101213261 1277.31