Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00472 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCTCACCCCTCCTTCACTTTCTCTACTCATCCTTTTATGACTTCTTCTTACTCTGACCTTCTTGCCTCTGCCAACATCGATCCTCCTTCCTCCGCTCCTCTCCGCGCTTCCACTACCGGAGTTCCTAAATTCAAATCCCTCCCTCCCCCTTCTCTCCCTCTCTCTCCGCCCCCCATGTCTCCTTCTTCCTTTTTCGCCATTCCTCCTGGTTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTTAGTGCTTCTCATGTTCTGCCGTCGCCGACCACCGGGACTTTCCCGTCTCACTCGTTGAATTGGAAGAGCAATTTTGGATATAATCAGCAGAACATTAAGGAAGAAAACAAATATTCGTCTAATTTCTCATTTCAAACTCAATCCTCAAAGCTCCCGCCGACGTCTTTTCAGCCTTCATCCACCATAGCTCCCACCACTCAGGGATGGAGTTTTCAAGAACAGCGCAAGAAGGAGGATAGTTTTTCGTCCGAGAAGAATATGGTAAAGCCGGAGTTTGGATCGATGCGGAGCTTCTCACCGGAATATGGGGTTGTTCAAAACCAGAGCCAAAACAACGGCAGCGGGGAATTGCGGTCTGACTATGGCAACAATTATCCTCAACAATCTCAGACAGTGAATCGAAGGTCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCCAAGCCCCAATCCACGAGGAGGTCGTCGCTGTCATCGGCCGGTTCTTCTCAAGCCATAGTGGCTTTGAATCAGGCCGCTAACGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGTGGCCAATTTGACGGCGTTGCAACACCGGAGAATTCCTCGATTTCAATCGGCGACGAAGACTTCGATCGGAGCTCTCAGAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGAAGAACCAGAGGCTAAGAGATGGCGAAGGGAAGGTGACAACAATGAAGGTATTTCGGCTGCCGGCAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACTACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTACGGCCAGAAAGTTGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGGGCAGTGATAACAACCTATGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGCAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCTAACAACGAGCCTCCTGCCGCGATTCGCCCATTATCGGTAGTGACCCATCACTCAAACAACGGAGGGCATCCGCAGGGTCTACGGCTGCAGCGATCTTCGGATTCCCAAGCAGCGTTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGATCCTACATGAACCAAACACAGCCCAATGACAATTTGTTCACAAGAGCCAAAGAAGAGCCAAGAGATCATGATATGTTCATCCAATCTCTCCTATGTTAA 1731 49.68 MASSSGSLDTSANSHPSFTFSTHPFMTSSYSDLLASANIDPPSSAPLRASTTGVPKFKSLPPPSLPLSPPPMSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGTFPSHSLNWKSNFGYNQQNIKEENKYSSNFSFQTQSSKLPPTSFQPSSTIAPTTQGWSFQEQRKKEDSFSSEKNMVKPEFGSMRSFSPEYGVVQNQSQNNGSGELRSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSQAIVALNQAANEMADQSFTTQGSGQFDGVATPENSSISIGDEDFDRSSQKSKSGGDDFDEEEPEAKRWRREGDNNEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNEPPAAIRPLSVVTHHSNNGGHPQGLRLQRSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGSYMNQTQPNDNLFTRAKEEPRDHDMFIQSLLC* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2993098 2996444 + CsaV3_1G004720.1 Csa01g00472 514969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00472 576 MobiDBLite consensus disorder prediction 137 237 - -
Csa01g00472 576 MobiDBLite consensus disorder prediction 344 379 - -
Csa01g00472 576 Gene3D WRKY domain 219 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 46 548 - -
Csa01g00472 576 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 548 IPR044810 GO:0003700
Csa01g00472 576 Pfam WRKY DNA -binding domain 408 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 MobiDBLite consensus disorder prediction 41 68 - -
Csa01g00472 576 MobiDBLite consensus disorder prediction 324 343 - -
Csa01g00472 576 MobiDBLite consensus disorder prediction 137 167 - -
Csa01g00472 576 MobiDBLite consensus disorder prediction 282 305 - -
Csa01g00472 576 ProSiteProfiles WRKY domain profile. 402 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 MobiDBLite consensus disorder prediction 324 390 - -
Csa01g00472 576 MobiDBLite consensus disorder prediction 196 232 - -
Csa01g00472 576 SMART WRKY_cls 407 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 Gene3D WRKY domain 394 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 SUPERFAMILY WRKY DNA-binding domain 399 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g00472 576 MobiDBLite consensus disorder prediction 287 305 - -
Csa01g00472 576 MobiDBLite consensus disorder prediction 459 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00472 Csa-Chr1:2993098 Csa03g03028 Csa-Chr3:28698684 1.43E-116 dispersed
Csa06g03497 Csa-Chr6:28610615 Csa01g00472 Csa-Chr1:2993098 5.56E-13 dispersed
Csa07g00347 Csa-Chr7:2571163 Csa01g00472 Csa-Chr1:2993098 3.70E-13 dispersed
Csa01g00472 Csa-Chr1:2993098 Csa05g03014 Csa-Chr5:30396040 9.99E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30642 PF03106 WRKY 3.50E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00472 K13424 - csv:101207158 1137.87