Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00478 ATGGCCTCCAACCGCTGCATGAACACGTCTTGCCCAGCCCCCACCTCCCTACACTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATTCGCAAATCTCTGCCTTAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTCAGAGGAAGCTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGGTGTATAGTTTCTAAATCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACAGGTTGTGTGAAAAGATCTCGACTTGGTGTGATCCGGAGAGATGAAATCTCTAATGGCTTTGATGCAGTGACAGGTGGAAATGTTGGCCTTTTGCGACCTGCTTCTGTTAAGGATCAAGTGGTTGGAAATGGAATTAACGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCGACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTACACAAAACAGAGGAGAAAATCTCAGGAATCCATTTGGGGAAGTTGGATCGAGCTTTTTTAATATGAATAAAATACCTGTTAATTGCCAACCATCTGTTGGGTCATTTACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCTTAACTCAGCCATCACTAAGTATAACTTTGGGAGTTCCATTAGGTACACCGAATTTTGTGGTACCCTGTCCAGGAAGTGCTGCTCACGAGGATGAAAAGAGCATTCTGCCATTTCAACAAGGCCAAAGATCTCGTCCAATATTTCCCAAGCTCATAAAAACTGGGACCACGGTTAATTCTGAAGCAAGAAAGGGAATGGCTCCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAGAATCAACTTCTTCCAAGATACTGGCCAAGGATTACGGACCAAGAGCTAGAACAATTATCTGGAGATTTGAACTCTACTATTGTTCCACTCTTTGAAAAGGTGCTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCTCAATCAGAAGGTCTTCCTGTTAAGGTTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACCCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTCAGTCGGATAGATCCTGGAGGCCAATTAGTCATGGGATTTCGAAAAGCAACTAATTCTACTGATGTACAGGATGCCAAGATTCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTAGGGTCTTTCAGAATTTGCCTTCAAGAGCTGGAGGAGATACTAGTTTGCACAAAAGTGAAAATTTTGGGGGGATGTCAAATCATGTTTCAGGACAACAACCAATATTAACCATGGAAAAGAAAGGGGCTCGAAACATTGGGTCTAAAAGTAAAAGGTTGCTCATGCATAGTGAAGATGCTCTGGAGTTGAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAACCCCACCATTGTCACTATTGATGACCATGAATTTGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATCTTCACTGCCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGACGTTCTTCTCCCTCCAAAGTGGAGTTGTTCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAGGAGAATCTCCTAAGAGCGAGTAAAGATTTTAAGAAACGGAAAATTGTGAAGAGCCAGAAGTCTATACAGGAACTCGAGCCTTCTGGTTTGGATGCACTGGCTAGTGCTGCTGTTCTGGGTGATAGTATAGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCCCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTACGGAAGAAGAAACGCCAATCAGAACGTGAAGTGGAACCTTTGCTCAAGGATAGAAATCCACAACTCGATGAAACAGGAATGAGTGGAACACTGAGGGGTACGTCTCTGCAAACAAACTATTCAGAGAACGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCGAATAGCAGTGGTCAAATTGACTTGAACTGCCACCCAGACCGTGAGGATATGGAACTAGAGGGAGCAGGATTAAGCACGATGAGTCTTGTTGAGGCTGCTAGCCAACCTGTAGATAGCTATTCAAAGCAAATTGGCGTCTCCAGCGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAAAGTGAGAGACGCTTGTCTGGGGAAGTGTATCATGGATCAGGTCACGAGAGCACAAGTGATGGATGCAAAGAGCACCATTGA 2607 45.34 MASNRCMNTSCPAPTSLHWTKGWPLGSAGFANLCLNCGSAYENLVFCDTYHSEEAGWRDCSFCGKRIHCGCIVSKSMFECLDYGGIGCTGCVKRSRLGVIRRDEISNGFDAVTGGNVGLLRPASVKDQVVGNGINEEKLLQLCNIMEANEPDHFQQSQRVDRSASPTQNRGENLRNPFGEVGSSFFNMNKIPVNCQPSVGSFTYSKLDTSRPHLELKDMKESLTQPSLSITLGVPLGTPNFVVPCPGSAAHEDEKSILPFQQGQRSRPIFPKLIKTGTTVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVKVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDVQDAKIPTLSNGSHSGDASFSRVFQNLPSRAGGDTSLHKSENFGGMSNHVSGQQPILTMEKKGARNIGSKSKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTARPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCSDNVWDLSRCTCSAPEEISTKEQENLLRASKDFKKRKIVKSQKSIQELEPSGLDALASAAVLGDSIADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVEPLLKDRNPQLDETGMSGTLRGTSLQTNYSENEGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSTMSLVEAASQPVDSYSKQIGVSSVTSEQQSSQPSSVESERRLSGEVYHGSGHESTSDGCKEHH* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3027039 3056821 - CsaV3_1G004780.1 Csa01g00478 514975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00478 868 Gene3D - 313 440 IPR015300 -
Csa01g00478 868 SUPERFAMILY DNA-binding pseudobarrel domain 332 436 IPR015300 -
Csa01g00478 868 SMART B3_2 335 435 IPR003340 GO:0003677
Csa01g00478 868 MobiDBLite consensus disorder prediction 727 743 - -
Csa01g00478 868 MobiDBLite consensus disorder prediction 823 868 - -
Csa01g00478 868 Pfam CW-type Zinc Finger 578 621 IPR011124 GO:0008270
Csa01g00478 868 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Csa01g00478 868 MobiDBLite consensus disorder prediction 823 844 - -
Csa01g00478 868 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 837 - -
Csa01g00478 868 MobiDBLite consensus disorder prediction 153 175 - -
Csa01g00478 868 MobiDBLite consensus disorder prediction 725 791 - -
Csa01g00478 868 CDD B3_DNA 333 434 IPR003340 GO:0003677
Csa01g00478 868 ProSiteProfiles Zinc finger CW-type profile. 573 623 IPR011124 GO:0008270
Csa01g00478 868 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 837 - -
Csa01g00478 868 Gene3D - 569 622 - -
Csa01g00478 868 MobiDBLite consensus disorder prediction 747 769 - -
Csa01g00478 868 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00478 Csa-Chr1:3027039 Csa03g03001 Csa-Chr3:28558816 0 dispersed
Csa01g00478 Csa-Chr1:3027039 Csa05g00141 Csa-Chr5:765460 1.42E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30643 PF02362 B3 2.70E-16 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00478 - - cmo:103497016 1687.55