Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00478 | ATGGCCTCCAACCGCTGCATGAACACGTCTTGCCCAGCCCCCACCTCCCTACACTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATTCGCAAATCTCTGCCTTAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTCAGAGGAAGCTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGGTGTATAGTTTCTAAATCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACAGGTTGTGTGAAAAGATCTCGACTTGGTGTGATCCGGAGAGATGAAATCTCTAATGGCTTTGATGCAGTGACAGGTGGAAATGTTGGCCTTTTGCGACCTGCTTCTGTTAAGGATCAAGTGGTTGGAAATGGAATTAACGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCGACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTACACAAAACAGAGGAGAAAATCTCAGGAATCCATTTGGGGAAGTTGGATCGAGCTTTTTTAATATGAATAAAATACCTGTTAATTGCCAACCATCTGTTGGGTCATTTACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCTTAACTCAGCCATCACTAAGTATAACTTTGGGAGTTCCATTAGGTACACCGAATTTTGTGGTACCCTGTCCAGGAAGTGCTGCTCACGAGGATGAAAAGAGCATTCTGCCATTTCAACAAGGCCAAAGATCTCGTCCAATATTTCCCAAGCTCATAAAAACTGGGACCACGGTTAATTCTGAAGCAAGAAAGGGAATGGCTCCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAGAATCAACTTCTTCCAAGATACTGGCCAAGGATTACGGACCAAGAGCTAGAACAATTATCTGGAGATTTGAACTCTACTATTGTTCCACTCTTTGAAAAGGTGCTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCTCAATCAGAAGGTCTTCCTGTTAAGGTTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACCCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTCAGTCGGATAGATCCTGGAGGCCAATTAGTCATGGGATTTCGAAAAGCAACTAATTCTACTGATGTACAGGATGCCAAGATTCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTAGGGTCTTTCAGAATTTGCCTTCAAGAGCTGGAGGAGATACTAGTTTGCACAAAAGTGAAAATTTTGGGGGGATGTCAAATCATGTTTCAGGACAACAACCAATATTAACCATGGAAAAGAAAGGGGCTCGAAACATTGGGTCTAAAAGTAAAAGGTTGCTCATGCATAGTGAAGATGCTCTGGAGTTGAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAACCCCACCATTGTCACTATTGATGACCATGAATTTGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATCTTCACTGCCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGACGTTCTTCTCCCTCCAAAGTGGAGTTGTTCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAGGAGAATCTCCTAAGAGCGAGTAAAGATTTTAAGAAACGGAAAATTGTGAAGAGCCAGAAGTCTATACAGGAACTCGAGCCTTCTGGTTTGGATGCACTGGCTAGTGCTGCTGTTCTGGGTGATAGTATAGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCCCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTACGGAAGAAGAAACGCCAATCAGAACGTGAAGTGGAACCTTTGCTCAAGGATAGAAATCCACAACTCGATGAAACAGGAATGAGTGGAACACTGAGGGGTACGTCTCTGCAAACAAACTATTCAGAGAACGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCGAATAGCAGTGGTCAAATTGACTTGAACTGCCACCCAGACCGTGAGGATATGGAACTAGAGGGAGCAGGATTAAGCACGATGAGTCTTGTTGAGGCTGCTAGCCAACCTGTAGATAGCTATTCAAAGCAAATTGGCGTCTCCAGCGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAAAGTGAGAGACGCTTGTCTGGGGAAGTGTATCATGGATCAGGTCACGAGAGCACAAGTGATGGATGCAAAGAGCACCATTGA | 2607 | 45.34 | MASNRCMNTSCPAPTSLHWTKGWPLGSAGFANLCLNCGSAYENLVFCDTYHSEEAGWRDCSFCGKRIHCGCIVSKSMFECLDYGGIGCTGCVKRSRLGVIRRDEISNGFDAVTGGNVGLLRPASVKDQVVGNGINEEKLLQLCNIMEANEPDHFQQSQRVDRSASPTQNRGENLRNPFGEVGSSFFNMNKIPVNCQPSVGSFTYSKLDTSRPHLELKDMKESLTQPSLSITLGVPLGTPNFVVPCPGSAAHEDEKSILPFQQGQRSRPIFPKLIKTGTTVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVKVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDVQDAKIPTLSNGSHSGDASFSRVFQNLPSRAGGDTSLHKSENFGGMSNHVSGQQPILTMEKKGARNIGSKSKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTARPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCSDNVWDLSRCTCSAPEEISTKEQENLLRASKDFKKRKIVKSQKSIQELEPSGLDALASAAVLGDSIADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVEPLLKDRNPQLDETGMSGTLRGTSLQTNYSENEGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSTMSLVEAASQPVDSYSKQIGVSSVTSEQQSSQPSSVESERRLSGEVYHGSGHESTSDGCKEHH* | 869 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3027039 | 3056821 | - | CsaV3_1G004780.1 | Csa01g00478 | 514975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00478 | 868 | Gene3D | - | 313 | 440 | IPR015300 | - | |
Csa01g00478 | 868 | SUPERFAMILY | DNA-binding pseudobarrel domain | 332 | 436 | IPR015300 | - | |
Csa01g00478 | 868 | SMART | B3_2 | 335 | 435 | IPR003340 | GO:0003677 | |
Csa01g00478 | 868 | MobiDBLite | consensus disorder prediction | 727 | 743 | - | - | |
Csa01g00478 | 868 | MobiDBLite | consensus disorder prediction | 823 | 868 | - | - | |
Csa01g00478 | 868 | Pfam | CW-type Zinc Finger | 578 | 621 | IPR011124 | GO:0008270 | |
Csa01g00478 | 868 | Pfam | B3 DNA binding domain | 335 | 434 | IPR003340 | GO:0003677 | |
Csa01g00478 | 868 | MobiDBLite | consensus disorder prediction | 823 | 844 | - | - | |
Csa01g00478 | 868 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 3 | 837 | - | - | |
Csa01g00478 | 868 | MobiDBLite | consensus disorder prediction | 153 | 175 | - | - | |
Csa01g00478 | 868 | MobiDBLite | consensus disorder prediction | 725 | 791 | - | - | |
Csa01g00478 | 868 | CDD | B3_DNA | 333 | 434 | IPR003340 | GO:0003677 | |
Csa01g00478 | 868 | ProSiteProfiles | Zinc finger CW-type profile. | 573 | 623 | IPR011124 | GO:0008270 | |
Csa01g00478 | 868 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 | 3 | 837 | - | - | |
Csa01g00478 | 868 | Gene3D | - | 569 | 622 | - | - | |
Csa01g00478 | 868 | MobiDBLite | consensus disorder prediction | 747 | 769 | - | - | |
Csa01g00478 | 868 | ProSiteProfiles | B3 DNA-binding domain profile. | 335 | 436 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00478 | Csa-Chr1:3027039 | Csa03g03001 | Csa-Chr3:28558816 | 0 | dispersed | |
Csa01g00478 | Csa-Chr1:3027039 | Csa05g00141 | Csa-Chr5:765460 | 1.42E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30643 | PF02362 | B3 | 2.70E-16 | CL0405 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00478 | - | - | cmo:103497016 | 1687.55 |