Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00479 ATGTGTCGTCGATCACAGCAGTGGGCTTATGTAGCCCTTCTGCTCCTCTGCTTCTCGTCGTCCTTACTAGTTGTTGTTGCAGCAGAAATGGGTACCCACCCCTCTGAAGTGGACGCTTTGCTCCTCATCAAAAGTAGTTTGTTCGATCCTAATGGGAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAATTCAAACTGGACTGGTGTTCTGTGCTACAATACGACATTTGATGATAACTATCTACATGTTGCTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAAATTGTCACCTGCGCTTGGCCGTTTATCTTACCTGAGAGTTTTGGATTTTATGTGGAATAAGATAAGTGGGGAAATACCAAGAGAGATAGGCAACCTAACGTCCTTAGAACTGTTGCTTCTGAATGGGAACCAGTTGTCAGGTTCATTGCCTGAAGATCTTGGTAATCTTCTACATTTAGACAGAATACAGATTGACCAGAACCATATATCAGGACTAATACCCAAATCTTTTGCAAACTTAAAAGCAACAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCGTCTGAGCTATCTGGATTGCCCAATCTTGTTCACTTCCTTCTTGACAACAACAACTTGTCGGGGAAACTTCCACCTGAGTTGTTTCAATTGCCAAACTTAGAAATACTTCAACTTGACAACAACAACTTCAGCGGGGCCACAATACCAGATTCTTATGGAAAGATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGGTCAATTCCAGATCTGAGCAGAATAAAGAACCTCGGTTATCTAGATCTAAGTTCCAATCAACTAAGTGGATTGATACCTCGTGGTAAACTCTCTGAGAATATCACAACCATCATCTTATCTGACAACCGTCTTACTGGCACCATACCATCCAGTCTTTTGGGTCTACCACATCTTCAAAAATTGTCAGTTGCAAATAATTCATTGAACGGTTCTGTTCCATCTACCATATGGCAAAGCAGGATGCTCAATTCTCTGGACAGTCTTACAGTAGAGTTGCAGAACAATAATTTTTCAGATATTTTGGGAAGCATCCATCTCCCTCTGAATGTTTCTGTCAGGCTTCAAGGAAATCCCGCTTGTGCTAATAACAGCCTGCTGGATTTTTGTGGATCTGAGAGTGAGGATATAATTGACATTCCAACAAATAACCCTCTTGGCTGTTCTGGCCCAATATGCCCACCTTCTTACGAATGTTACTCGGCAAAATGCCCGTCATCTTGTCTCTGTTCCGCACCTCTTCTAATTGGATATCGTTTAAAAAGTCCTGGATTCTCACGTTTCAGTCCATATCAACATATGTTTGAGGAATATCTCACCAGTGGTCTTAAGGTACATCTTGAACAATTGGACATTGGTTCTGCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAGCCTAAAGGTTTTCCCTCTCTATGTTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGCGAGGTTTTACGAATAGTTTACAAGTTTACAAATTGGAAAATTCAAGATAGTGATATATTTGGACCATACGAACTTCTCAGCTTGACAATATCAGACGTTTATAAGAAGGTATTTTTCACACCATCATCTGATTCTACTATGAGTAAAGGGGCATTGGCGGGAATAATATTAGGAGCAATTGCTGGTGGAGCAATGCTATCTGCAATTGTTTTTATTTTTATCATAAGATCACGTGTGAGGGGCCACCACATCTCAAGAAGGCGTCATCTGTCAAAAACCTCCATAAAGATCAAGGGCGTAAAGGAATTTGGTTATCGTGAAATGGCCCTAGCTACAAACAATTTTCATTGTTCCATGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCATGGCTGTTGCTATCAAACGTGCACAGGAGGGCTCACTGCAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTACTCTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGATATTGCGATGAAGAAGGGGAGCAGATGTTGGCTTATGAATTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTAAATTCTGCAGAACCTTTGAGTTTTGCCACAAGATTAAAAGCCGCCCTGGGTGCAGCTAAGGGAATTCTGTATCTGCATACGGAAGCTGATCCTCCAATATTCCATCGAGATATCAAGTCCAGCAATATATTATTAGACTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTTTACCCAATGCAGAAGGCGACGTGCCTGCTCATGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGTGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACAGTGCATATCAGTCTGGGAAAATTTTCTCCATAATTGATGGTCGACTGGGTTCTTATCCCGCTGAATGTGTAGAAAAATTCGTGACACTGGCTTTGAAGTGTTGCCAAGATGATACAGATGCACGCCCTTCAATGGTAGAAGTTGTGCGAACGCTTGAAAATATCTGGCTTATGCTGCCAGAGTCTGATTCGAAAATTTCAGAGCCTTTGATCAACGATGTCATCAAAGTGACCAGTCCCCCATCTTCATCATCCAATATGAACTATTACATATCAGAAGTCTCTGGCAGTGATCTTGTGAGTGGAGTAACTCCAACCATCATGCCAAGATAG 2859 41.31 MCRRSQQWAYVALLLLCFSSSLLVVVAAEMGTHPSEVDALLLIKSSLFDPNGNLSNWNKGDPCNSNWTGVLCYNTTFDDNYLHVAELQLLNMSLSGKLSPALGRLSYLRVLDFMWNKISGEIPREIGNLTSLELLLLNGNQLSGSLPEDLGNLLHLDRIQIDQNHISGLIPKSFANLKATKHFHMNNNSISGEIPSELSGLPNLVHFLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGATIPDSYGKMTKLLKLSLRNCTLQGSIPDLSRIKNLGYLDLSSNQLSGLIPRGKLSENITTIILSDNRLTGTIPSSLLGLPHLQKLSVANNSLNGSVPSTIWQSRMLNSLDSLTVELQNNNFSDILGSIHLPLNVSVRLQGNPACANNSLLDFCGSESEDIIDIPTNNPLGCSGPICPPSYECYSAKCPSSCLCSAPLLIGYRLKSPGFSRFSPYQHMFEEYLTSGLKVHLEQLDIGSAVWEKGPRLRMSLKVFPLYVADSNSSHMFNDSEVLRIVYKFTNWKIQDSDIFGPYELLSLTISDVYKKVFFTPSSDSTMSKGALAGIILGAIAGGAMLSAIVFIFIIRSRVRGHHISRRRHLSKTSIKIKGVKEFGYREMALATNNFHCSMVVGQGGYGKVYKGILADSMAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPNAEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNSAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQDDTDARPSMVEVVRTLENIWLMLPESDSKISEPLINDVIKVTSPPSSSSNMNYYISEVSGSDLVSGVTPTIMPR* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3067531 3115802 - CsaV3_1G004790.1 Csa01g00479 514976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00479 952 Gene3D Phosphorylase Kinase; domain 1 596 700 - -
Csa01g00479 952 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Csa01g00479 952 CDD STKc_IRAK 631 897 - -
Csa01g00479 952 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Csa01g00479 952 Gene3D Transferase(Phosphotransferase) domain 1 701 908 - -
Csa01g00479 952 SMART serkin_6 625 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00479 952 Pfam Protein kinase domain 628 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00479 952 Gene3D Ribonuclease Inhibitor 296 388 IPR032675 -
Csa01g00479 952 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Csa01g00479 952 SUPERFAMILY L domain-like 44 412 - -
Csa01g00479 952 SMART LRR_typ_2 320 344 IPR003591 -
Csa01g00479 952 SMART LRR_typ_2 129 153 IPR003591 -
Csa01g00479 952 SMART LRR_typ_2 201 225 IPR003591 -
Csa01g00479 952 SMART LRR_typ_2 273 293 IPR003591 -
Csa01g00479 952 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515
Csa01g00479 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 927 - -
Csa01g00479 952 SUPERFAMILY Protein kinase-like (PK-like) 611 930 IPR011009 -
Csa01g00479 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Csa01g00479 952 Gene3D Ribonuclease Inhibitor 32 295 IPR032675 -
Csa01g00479 952 ProSiteProfiles Protein kinase domain profile. 625 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00479 952 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 15 927 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00479 Csa-Chr1:3067531 Csa04g01709 Csa-Chr4:16488228 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77744 PF00069 Pkinase 5.70E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00479 - - csv:101208136 1823.14