Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00488 ATGATAGGCAATACGGCAACCTCGGCCTCCCCACTTCTTCCTAATTCTTCCGAACCATACTCTTGCTTAGAAAATGGAAACAACAACAACAACAAGAGGAAAAGAAGGCCTGCAGGGACCCCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTACTAGAATCGGACCGGTATGTGTGCGAGATTTGCAACCAAGGGTTCCAGAGGGATCAGAACCTGCAGATGCATAGGCGGCGGCATAAGGTTCCTTGGAAGCTGCTGAAGAGGGAAAGTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGTCCGGAACCCACCTGCCTGCATCACGATCCTTGCCATGCCCTCGGTGACCTCGTTGGAATCAAGAAGCACTTCCGAAGGAAACACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCGGTTCAGTCCGATTATAAGGCTCATCTCAAAACCTGTGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGCAAGAATCACAAGTCCAGCCCGCATGTCTGTCCAGAACGGCTTCGAGTCCAAGCCCCTCCAGCGACACTAACTTCAGCAGCACTCCCGCTCCCAGCAGTAATTGGCATGCTCTAGTAACGCCACCACTCACATTGAAGCCCGTGGATGCCATCTTCTTAACCCCCACGGGGGACTCCAACAACAACAACAATAGCGATCACAATTTAGACCTCAAACTGTCAACTGCATCAAATGGTGTGGAAGGGAGGAACAATTATAATAATAATAAGAAGGGTTCTTCAACGAAACTTGAGTTGTCGATGGGATCATTTGATTTTGAGGACGAGAAGAAAAAGATGTTGAAATTGGATGATGGTGGGGCTGGGGATGTTAGAGAAGAAGCACGGGAGGAGCTAAGGGTGGCGATGGCAGAGAAGGCATATGCGGAGGAAGCAAGGAAGCAGGCAAAGAGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCACAGGCTGAATTAGATAAGGCCACAGCCCTTAAACAAGCAGCAATCAAGCAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAACTAAAACTAAAACTAAAACTACTACCACTACCACGAGCACGAGTGCAGCCACTGATCATGACAATTATTCCTCCGTAGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACTATTATACCTAAACCGCCCAACAATTAA 1365 48.42 MIGNTATSASPLLPNSSEPYSCLENGNNNNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQVQPACLSRTASSPSPSSDTNFSSTPAPSSNWHALVTPPLTLKPVDAIFLTPTGDSNNNNNSDHNLDLKLSTASNGVEGRNNYNNNKKGSSTKLELSMGSFDFEDEKKKMLKLDDGGAGDVREEAREELRVAMAEKAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKTKTKTKTTTTTTSTSAATDHDNYSSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3175342 3178799 + CsaV3_1G004880.1 Csa01g00488 514985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00488 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Csa01g00488 454 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 441 - -
Csa01g00488 454 CDD ATP-synt_Fo_b 299 394 - -
Csa01g00488 454 Gene3D Classic Zinc Finger 49 134 - -
Csa01g00488 454 MobiDBLite consensus disorder prediction 197 225 - -
Csa01g00488 454 MobiDBLite consensus disorder prediction 1 48 - -
Csa01g00488 454 MobiDBLite consensus disorder prediction 1 28 - -
Csa01g00488 454 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Csa01g00488 454 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Csa01g00488 454 SMART c2h2final6 102 132 IPR013087 -
Csa01g00488 454 SMART c2h2final6 61 83 IPR013087 -
Csa01g00488 454 SMART c2h2final6 138 165 IPR013087 -
Csa01g00488 454 Coils Coil 317 379 - -
Csa01g00488 454 PANTHER OS03G0310200 PROTEIN 14 441 IPR039288 GO:0009630
Csa01g00488 454 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Csa01g00488 454 MobiDBLite consensus disorder prediction 398 418 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00739 Csa01g00488 CCT
Csa01g00739 Csa01g00488 ECH
Csa01g00488 Csa01g00739 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00488 Csa-Chr1:3175342 Csa01g00739 Csa-Chr1:4678750 6.40E-158 dispersed
Csa01g00488 Csa-Chr1:3175342 Csa06g03225 Csa-Chr6:27277593 1.51E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30645 PF00096 zf-C2H2 0.0043 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00488 K25871 - csv:101209426 813.142