Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00489 ATGGCATTTCAAGGAAAGAAGCTCATCAACAATCCCGACAATGTGGTGACGGAATTTATTGAAGGTTTGGTGGAAACATATCCTGGTTTACAGTACTTGGATGGTTTCCCTAAGGTGAAGGTTGTTTTACGAGCTGATGTTTCAAGTGCAACATACGACAAAGTCGCCATTATATCAGGCGGTGGAAGTGGACATGAGCCTGCACATGCTGGATTTGTTGGGGAAGGAATGCTGACAGCAGCTATTTGTGGAGATGTTTTTGCCTCACCACCAGTTGATTCGATTTTGGCTGGAATTCGAGCTGTAACTGGACCTATGGGGTGTCTTCTCATCGTGAAGAATTATACTGGTGACCGTTTAAATTTTGGTTTGGCTGCTGAGCAAGCAAAATCAGAAGGATATAAAGTAGAGACTGTTATTGTTGGGGATGATTGTGCCTTGCCACCACCTCGAGGTATAACTGGCCGGAGAGGATTGGCTGGGACTATACTTGTTCACAAGGTTGCTGGAGCTGCTGCTGCAGCGGGGCTTTCTCTTTTAGATGTTGCCACAGAAGCAAAACATGCAGCTGAAATGATTGGAACGATGGGAGTTGCATTGTCAGTTTGCACACTGCCTGGCCAGGTCACATCAGATCGTCTGGGCCCAGGGAAAATGGAACTTGGTCTTGGAATTCATGGTGAACCTGGTGCTGCTGTGGCCGATCTTCAGCCTGTTGATGTGATAGTATCTCATGTTCTCAAACAAATATTATCACCGGAAACTAATTATGTTCCAATAACACGAGGTAATAGAGTGGTGCTCATGGTTAACGGGTTAGGTGCTACCCCGGTGATGGAATTAATGATTGCAACTGGGAAAGCAGTTCCTAAGTTGCAGTTGGAGCATGGGTTGGCTGTTGACAGAGTGTACAGTGGTTCATTTATGACTTCTCTTGATATGGCCGGGTTTTCAATTACCATCATGAAATCAGATCAAACAGTTTTGCAACGGTTGGATGCTGCAACCAAGGCTCCTTGTTGGCCCATTGGTGCTGATGGTAGTCATCTACCTTCCAAAATACCTGTTCCACTACCACCACCTGCTCTTGCTACAAAGAACAGTGAGACACTCGGTGGACCCGTTCAACTAAATCAACAAGGCATTATTCTAGAGGCTGCAATTGAGGCAGCTGCCAAAGCAGTGATCAATCTCAAGGACAAATTAAATGAATGGGATAGCAAAGTGGGCGATGGTGATTGTGGGTCAACGATGTTCAGGGGTGCAACAACTATTATTGAGGACCTAAAATGCTATCCACTGAACGATGCTGCTGAGACAGTGAATGAAATTGGATCGTCCATTAGAAGGGTTATGGGAGGAACTAGTGGGATTATATATACTATATTTTGCAAGGCAGCATATACAAAATTGAAATCAGCCAACCTAGATAACATCACTTCGCAAAAATGGGCTGAAGCATTAGAAGCTTCCATAGCTGCAATTAGTAAGTATGGTGGGGCTACTGCTGGTTATCGAACATTACTTGATGCCCTCATTCCAGCCTCTGAAGTTCTCAGGAAGAAATTAGATACTGGTGAAAATCCGATCACCGCTTTTATTCACTCATCTGAAGCAGCATTGGCTGGGGCTGAAGCAACAAAAAACATGCAGGCTCAGGCTGGCCGTTCGTCATATGTATTTGGGGAAATTCTCGCTACAGTTCCAGATCCAGGTGCAATGGCCGCAGCAGCATGGTATAGAGCTGCGGCTATGGCTGTCATGGAAAGGTGCCACGCTGCTTCATGA 1788 45.41 MAFQGKKLINNPDNVVTEFIEGLVETYPGLQYLDGFPKVKVVLRADVSSATYDKVAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGITGRRGLAGTILVHKVAGAAAAAGLSLLDVATEAKHAAEMIGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVIVSHVLKQILSPETNYVPITRGNRVVLMVNGLGATPVMELMIATGKAVPKLQLEHGLAVDRVYSGSFMTSLDMAGFSITIMKSDQTVLQRLDAATKAPCWPIGADGSHLPSKIPVPLPPPALATKNSETLGGPVQLNQQGIILEAAIEAAAKAVINLKDKLNEWDSKVGDGDCGSTMFRGATTIIEDLKCYPLNDAAETVNEIGSSIRRVMGGTSGIIYTIFCKAAYTKLKSANLDNITSQKWAEALEASIAAISKYGGATAGYRTLLDALIPASEVLRKKLDTGENPITAFIHSSEAALAGAEATKNMQAQAGRSSYVFGEILATVPDPGAMAAAAWYRAAAMAVMERCHAAS* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3182830 3217402 - CsaV3_1G004890.1 Csa01g00489 514986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00489 595 ProSiteProfiles DhaL domain profile. 382 585 IPR004007 GO:0004371|GO:0006071
Csa01g00489 595 TIGRFAM dak_ATP: dihydroxyacetone kinase 6 583 IPR012734 GO:0004371|GO:0005524|GO:0006071
Csa01g00489 595 Pfam DAK2 domain 408 583 IPR004007 GO:0004371|GO:0006071
Csa01g00489 595 SUPERFAMILY DAK1/DegV-like 6 343 - -
Csa01g00489 595 ProSiteProfiles DhaK domain profile. 11 341 IPR004006 GO:0004371|GO:0006071
Csa01g00489 595 Gene3D - 381 589 IPR036117 GO:0004371|GO:0006071
Csa01g00489 595 Gene3D Dihydroxyacetone kinase; domain 1 16 191 - -
Csa01g00489 595 PANTHER DIHYDROXYACETONE KINASE 1 591 - -
Csa01g00489 595 Pfam Dak1 domain 21 339 IPR004006 GO:0004371|GO:0006071
Csa01g00489 595 Coils Coil 388 408 - -
Csa01g00489 595 Gene3D Dihydroxyacetone kinase; domain 2 193 346 - -
Csa01g00489 595 SUPERFAMILY DhaL-like 379 583 IPR036117 GO:0004371|GO:0006071
Csa01g00489 595 SMART Dak2_2 408 585 IPR004007 GO:0004371|GO:0006071
Csa01g00489 595 PANTHER TRIOKINASE/FMN CYCLASE 1 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00489 - - - csv:101209672 1112.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00962 Csa01g00489 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
Vvi17g944 . . . . . . . Bma12g01273 Cmo13g01209 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0309 Lsi02g00014 Csa01g00489 Chy12g01592 Cme12g02050 . Blo15g00052 . . Bpe07g01078 . . . . . . . . Car13g00981 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003104 1 8 1 1 2 1 1 3 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 2 3 1 1 2 3 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00489 Csa_Chr01 FPKM 31.54681 36.398529 15.648836 14.821039 18.460581 21.218052 20.764856 20.511326 21.386042 21.969198