Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00494 | ATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAATCCGATTCTTCCAGCCCCGACGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCAACAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAATCGCAGATTTCTAACCCCAGCAGCAGTAGCTTCAGAGGTACTGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCATCGAAGTCTGGTTCAATATCCGCCTTGAACTTGGGGCCGAAGGGCAAGAAGTCGGCCGATGTGAAGGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCACTCGGATTGAATAGGATAAAGACAAGATCAGGCCCACTGCCGCAGGAGAGCTTTTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCGAGCAATCTTTCCAGGAATTGTGGTGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTCGTGGGGGGAAGAAAGAGGCGGCGTGTCAGAAAAGATTGGGTTTTCAGGACAATGTTAAAAGCTATATTCACGATGCTAGCAATTCCGAGAATATGCCAATTGGTAATGCACCATCTACTGAACGGAGTCCAAGTTTGTTAGGACAGCCTCGGATACAGAATATTGAATCATCCAACGAAGCTGGATGCTATGGATCATCATGGGGATTTTCTGAAGGATTAAGAAATTTAGATTTCTGTACGCCAGAGCCCTCTTATGATTGTGAAAATCCAAAGGAGTCTGAGTCTCCTCGCTTTCAAGCTATACTCCGAGTCACAAGTGCTCCTCGAAGAAAGTATCCTGCTGACATCAAAAGTTTTTCCCACGAACTAAATTCGAAAGGTGTACGACCTTTCCCACTTTGGAAGTCACGTCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCTAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAGAAAAATGTTGATACTCATCCAGAGTGGCAAGAGACAATCGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCAATGTCATCCCCAGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACACGAATACTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAAGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAACTTCGTCAGTCAAGAAATCTGCATTCTGCTGATAAACGCACGGCTCCGGCTATGGGAAGGGAAATGAAAAGTTCTAGCGCAGCCAAGGCTTCGAAGGGAACATCTTCCAGGAAATCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTTTCAACATCTCCTGATGATACTTCAAAGAACTTGGTATCTCCTACTGGCAGAGATCGGATGGCATCTTGGAAAAGATTGCCTTCTCCAGCAAAAAGCAGCGTGAAAGAATCTACTTTGAAGGTTCAGGGTGATAATAAAAAATTTAAATCTCTGAACATGTCAAAAATCAGGATGAGTGTTTCTGAAACTGATTTTGCTGCTGCTAAGGTTTCTGAGCTTCCTCTGCCCAGAGATTCGCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATATGTCGAATTTGTGAAGAAGAAATTCCTACTGCAAATGTGGAAGATCATTCAAGAATTTGTGCAGTTGCTGATAGATGTGATCAAAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAGATGATCGAGTCTTTTACGCAGAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCAAATTCTAGCATGACCGAAGAATCTGATATTTCCCCAAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTCATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAAGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCTTTATTAACACCAAGAACCAGTCAGTTTGACTTGTTTTTGGCAGGAAAAGGTGCTTACTATGAACATGACGATCTTACGCAGATCAGTGATTTGGCAGATATTGCACGTTGTTCAGCTAATACACCTCTGGGGGATGATTGCTCGATGCAGTATCTGCTAACATGCCTTGAAGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCACTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGTTGGTGGATGATGAAAAGATCGACATAGCAAGCACTGTCATTGATGAAGATACTCCTCTTGAAGATGATATTGTTCGTAGCTTAAGAACTAGTCCCATCCATTCTTCAAAGGATCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCTTGGCTAAAAAGAGGACTACGGGGGATCTTTTTGCAATAAAGGTTTTGAAGAAAGCGGATATGATTCGGAAGAACGCGGTTGAAAGTATTTTGGCAGAACGTAATATTTTAATTTCTGTGCGCAATCCTTTTGTGGTTCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTTGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCTTTGTTGAGAAATTTGGGCTGCTTAGACGAAGAGGTTGCTCGTGTATATATCGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCACTTGGGGTTGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGCCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGACTTGTCTGGACCAGCTGTTAGTGGGACCACTCTTCTTGGCTATGATGAGCCTACCATGTCTGCTTCCGAGCATCAACAAGAAAGACGGAAAAAACGTTCTGCTGTTGGCACACCAGACTATTTGGCACCCGAGATACTATTGGGAACTGGACACGGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTTATTGTTGGCATTCCACCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAATCGTAAGATCCCTTGGCCTCAAATACCTGAAGAGATGAGCCATGATGCTCAAGATCTAATTGACCGATTATTGACGGAAGATCCCCACCAGCGACTTGGAGCTATAGGTGCATCAGAGGTGAAACAACATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCTCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTATTCATGGAATCATTCAGATGATCATGTCTATCCACACAGTGAACTTGAGGATTCGAGTGATGCCGATAGCTTGAGTGGTGATAGTTGTTTGAGCAATCGTCAAGATGAAGTGGGAGATGAATGTGGGGGTCTTACAGATTTTGAGCCCGGTGCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTCGCATCCATCAACTATGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA | 3897 | 43.08 | MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPNRSDKKKNKSAAKDESQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSGSISALNLGPKGKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSRGGKKEAACQKRLGFQDNVKSYIHDASNSENMPIGNAPSTERSPSLLGQPRIQNIESSNEAGCYGSSWGFSEGLRNLDFCTPEPSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRILFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRTAPAMGREMKSSSAAKASKGTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRMASWKRLPSPAKSSVKESTLKVQGDNKKFKSLNMSKIRMSVSETDFAAAKVSELPLPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARCSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHVYPHSELEDSSDADSLSGDSCLSNRQDEVGDECGGLTDFEPGASVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDA* | 1299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3256458 | 3287594 | + | CsaV3_1G004940.1 | Csa01g00494 | 514991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00494 | 1298 | CDD | STKc_MAST_like | 894 | 1182 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 660 | 694 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
Csa01g00494 | 1298 | PANTHER | SERINE/THREONINE PROTEIN KINASE IREH1-RELATED | 26 | 1296 | - | - | |
Csa01g00494 | 1298 | ProSiteProfiles | Protein kinase domain profile. | 888 | 1177 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
Csa01g00494 | 1298 | SUPERFAMILY | Protein kinase-like (PK-like) | 885 | 1216 | IPR011009 | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 64 | 78 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 201 | 221 | - | - | |
Csa01g00494 | 1298 | Coils | Coil | 642 | 662 | - | - | |
Csa01g00494 | 1298 | Gene3D | Transferase(Phosphotransferase) domain 1 | 972 | 1195 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 444 | 544 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 496 | 516 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 127 | 178 | - | - | |
Csa01g00494 | 1298 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 1178 | 1281 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 1220 | 1241 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 661 | 684 | - | - | |
Csa01g00494 | 1298 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1007 | 1019 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 46 | 63 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 148 | 176 | - | - | |
Csa01g00494 | 1298 | Pfam | Protein kinase domain | 888 | 1177 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00494 | 1298 | SMART | serkin_6 | 888 | 1177 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00494 | 1298 | Coils | Coil | 315 | 335 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 575 | 599 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 728 | 750 | - | - | |
Csa01g00494 | 1298 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 26 | 1296 | - | - | |
Csa01g00494 | 1298 | Gene3D | Phosphorylase Kinase; domain 1 | 886 | 1206 | - | - | |
Csa01g00494 | 1298 | MobiDBLite | consensus disorder prediction | 467 | 483 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00494 | Csa-Chr1:3256458 | Csa05g00547 | Csa-Chr5:3529216 | 0 | dispersed | |
Csa01g00494 | Csa-Chr1:3256458 | Csa04g02559 | Csa-Chr4:25208589 | 3.11E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77746 | PF00069 | Pkinase | 8.40E-66 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00494 | - | - | csv:101214945 | 2493.0 |