Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00494 ATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAATCCGATTCTTCCAGCCCCGACGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCAACAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAATCGCAGATTTCTAACCCCAGCAGCAGTAGCTTCAGAGGTACTGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCATCGAAGTCTGGTTCAATATCCGCCTTGAACTTGGGGCCGAAGGGCAAGAAGTCGGCCGATGTGAAGGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCACTCGGATTGAATAGGATAAAGACAAGATCAGGCCCACTGCCGCAGGAGAGCTTTTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCGAGCAATCTTTCCAGGAATTGTGGTGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTCGTGGGGGGAAGAAAGAGGCGGCGTGTCAGAAAAGATTGGGTTTTCAGGACAATGTTAAAAGCTATATTCACGATGCTAGCAATTCCGAGAATATGCCAATTGGTAATGCACCATCTACTGAACGGAGTCCAAGTTTGTTAGGACAGCCTCGGATACAGAATATTGAATCATCCAACGAAGCTGGATGCTATGGATCATCATGGGGATTTTCTGAAGGATTAAGAAATTTAGATTTCTGTACGCCAGAGCCCTCTTATGATTGTGAAAATCCAAAGGAGTCTGAGTCTCCTCGCTTTCAAGCTATACTCCGAGTCACAAGTGCTCCTCGAAGAAAGTATCCTGCTGACATCAAAAGTTTTTCCCACGAACTAAATTCGAAAGGTGTACGACCTTTCCCACTTTGGAAGTCACGTCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCTAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAGAAAAATGTTGATACTCATCCAGAGTGGCAAGAGACAATCGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCAATGTCATCCCCAGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACACGAATACTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAAGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAACTTCGTCAGTCAAGAAATCTGCATTCTGCTGATAAACGCACGGCTCCGGCTATGGGAAGGGAAATGAAAAGTTCTAGCGCAGCCAAGGCTTCGAAGGGAACATCTTCCAGGAAATCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTTTCAACATCTCCTGATGATACTTCAAAGAACTTGGTATCTCCTACTGGCAGAGATCGGATGGCATCTTGGAAAAGATTGCCTTCTCCAGCAAAAAGCAGCGTGAAAGAATCTACTTTGAAGGTTCAGGGTGATAATAAAAAATTTAAATCTCTGAACATGTCAAAAATCAGGATGAGTGTTTCTGAAACTGATTTTGCTGCTGCTAAGGTTTCTGAGCTTCCTCTGCCCAGAGATTCGCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATATGTCGAATTTGTGAAGAAGAAATTCCTACTGCAAATGTGGAAGATCATTCAAGAATTTGTGCAGTTGCTGATAGATGTGATCAAAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAGATGATCGAGTCTTTTACGCAGAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCAAATTCTAGCATGACCGAAGAATCTGATATTTCCCCAAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTCATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAAGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCTTTATTAACACCAAGAACCAGTCAGTTTGACTTGTTTTTGGCAGGAAAAGGTGCTTACTATGAACATGACGATCTTACGCAGATCAGTGATTTGGCAGATATTGCACGTTGTTCAGCTAATACACCTCTGGGGGATGATTGCTCGATGCAGTATCTGCTAACATGCCTTGAAGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCACTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGTTGGTGGATGATGAAAAGATCGACATAGCAAGCACTGTCATTGATGAAGATACTCCTCTTGAAGATGATATTGTTCGTAGCTTAAGAACTAGTCCCATCCATTCTTCAAAGGATCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCTTGGCTAAAAAGAGGACTACGGGGGATCTTTTTGCAATAAAGGTTTTGAAGAAAGCGGATATGATTCGGAAGAACGCGGTTGAAAGTATTTTGGCAGAACGTAATATTTTAATTTCTGTGCGCAATCCTTTTGTGGTTCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTTGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCTTTGTTGAGAAATTTGGGCTGCTTAGACGAAGAGGTTGCTCGTGTATATATCGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCACTTGGGGTTGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGCCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGACTTGTCTGGACCAGCTGTTAGTGGGACCACTCTTCTTGGCTATGATGAGCCTACCATGTCTGCTTCCGAGCATCAACAAGAAAGACGGAAAAAACGTTCTGCTGTTGGCACACCAGACTATTTGGCACCCGAGATACTATTGGGAACTGGACACGGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTTATTGTTGGCATTCCACCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAATCGTAAGATCCCTTGGCCTCAAATACCTGAAGAGATGAGCCATGATGCTCAAGATCTAATTGACCGATTATTGACGGAAGATCCCCACCAGCGACTTGGAGCTATAGGTGCATCAGAGGTGAAACAACATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCTCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTATTCATGGAATCATTCAGATGATCATGTCTATCCACACAGTGAACTTGAGGATTCGAGTGATGCCGATAGCTTGAGTGGTGATAGTTGTTTGAGCAATCGTCAAGATGAAGTGGGAGATGAATGTGGGGGTCTTACAGATTTTGAGCCCGGTGCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTCGCATCCATCAACTATGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA 3897 43.08 MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPNRSDKKKNKSAAKDESQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSGSISALNLGPKGKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSRGGKKEAACQKRLGFQDNVKSYIHDASNSENMPIGNAPSTERSPSLLGQPRIQNIESSNEAGCYGSSWGFSEGLRNLDFCTPEPSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRILFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRTAPAMGREMKSSSAAKASKGTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRMASWKRLPSPAKSSVKESTLKVQGDNKKFKSLNMSKIRMSVSETDFAAAKVSELPLPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARCSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHVYPHSELEDSSDADSLSGDSCLSNRQDEVGDECGGLTDFEPGASVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDA* 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3256458 3287594 + CsaV3_1G004940.1 Csa01g00494 514991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00494 1298 CDD STKc_MAST_like 894 1182 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 660 694 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 1 112 - -
Csa01g00494 1298 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 26 1296 - -
Csa01g00494 1298 ProSiteProfiles Protein kinase domain profile. 888 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00494 1298 MobiDBLite consensus disorder prediction 9 31 - -
Csa01g00494 1298 SUPERFAMILY Protein kinase-like (PK-like) 885 1216 IPR011009 -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 64 78 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 201 221 - -
Csa01g00494 1298 Coils Coil 642 662 - -
Csa01g00494 1298 Gene3D Transferase(Phosphotransferase) domain 1 972 1195 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 444 544 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 496 516 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 127 178 - -
Csa01g00494 1298 ProSiteProfiles AGC-kinase C-terminal domain profile. 1178 1281 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa01g00494 1298 MobiDBLite consensus disorder prediction 1220 1241 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 661 684 - -
Csa01g00494 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1007 1019 IPR008271 GO:0004672|GO:0006468
Csa01g00494 1298 MobiDBLite consensus disorder prediction 46 63 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 148 176 - -
Csa01g00494 1298 Pfam Protein kinase domain 888 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00494 1298 SMART serkin_6 888 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00494 1298 Coils Coil 315 335 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 575 599 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 728 750 - -
Csa01g00494 1298 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 1296 - -
Csa01g00494 1298 Gene3D Phosphorylase Kinase; domain 1 886 1206 - -
Csa01g00494 1298 MobiDBLite consensus disorder prediction 467 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00494 Csa-Chr1:3256458 Csa05g00547 Csa-Chr5:3529216 0 dispersed
Csa01g00494 Csa-Chr1:3256458 Csa04g02559 Csa-Chr4:25208589 3.11E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77746 PF00069 Pkinase 8.40E-66 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00494 - - csv:101214945 2493.0