Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00495 ATGCAGCCTCAACATGTCAAGCTTTACCTTTCTCTTTGGCATTTGGCCTTCCTTTTCGTCATTCCCGGTGTTAAACCAGATCTGAGTTCTGATAGAGCTTCTCTTCTGGCTCTTCGTACTGCTGTGGGTGGCCGAACCGCTGAGCTATGGAATGCAAGCGACGAAAGTCCTTGCTCATGGACTGGAGTAGAATGCGATGGAAATCGGGTTACAGTGCTTCGATTACCGGGCGTTTCTCTCTCAGGCGAAATACCCACTGGCATTTTTGGAAATTTAAACAATCTTCACACTATAAGTCTCAGGTTCAACGCATTAACTGGTCAGCTTCCTTCGGACCTTGCTGCATGCACTAGTCTTCGCAACCTCTACTTGCAGGGTAATGGATTTTCTGGTCATATTCCCGAGTTTATTTTCCAATTTCATAACCTTGTTCGCCTCAACTTGGCTTCCAACAACTTCTCCGGCGTCCTTGCTCCGGGTTTCGACCGACTTCAGCGGTTGAAGACTCTATTCCTTGAGAATAACCGGTTTATTGGTTCGATGCCGGCATTTAAGCTTCCTGTCCTCAAGCAGTTCAATGTTTCCAACAATTTTCTCAACGGATCTGTTCCCCGTCGTTTCCAGTCATTTCCCTCCACTGCCTTGTTAGGTAATCAACTTTGCGGGCGTCCCCTTGAGACATGCTCTGGAAATATTGTGGTGCCACTCACAGTAGATATTGGCATTAATGAGAACAGGAGAACGAAAAAACTATCTGGGGCTGTCATGGGTGGGATAGTGATAGGATCCGTATTGAGTTTCGTTATGTTTTGTATGATTTTCATGCTTTCTTGCCGGAGTAAGAGCGGTCAAATAGAGACTACTCTGGATATGACAACCCTTGATAATATACGAAGAGAAAAAGTGACTTACGAAAATCCTCAGTCCATAGCTGCTACTACGGCAATGGTACAGAATAAGAAAGAGGAAACAAATGAAAACATCGATGTAGTAAAAAAGTTGGTATTCTTCGACAATACAGCTAGGGTTTTTGATTTGGAGGATTTGTTGAGGGCTTCAGCAGAAGTGTTGGGTAAGGGAACCTTTGGAACAGCTTACAAAGCAGTCTTGGAGATTGGACATGTGGTGGCTGTAAAGAGATTGATGGATGTGACCATTTCTGAGAGAGAATTCAAGGAGAAAATTGAAGCAGTTGGAGCAATGGATCATAAAAATCTGGTTCCTCTCAAAGCATATTATTTCAGCGTAGATGAGAAGCTTCTGGTTTTTGATTACATGGCCATGGGAAGCTTATCCGCACTTTTGCACGGTAACAAAAGATGTGGTAGGACACCATTGAACTGGGAAATGAGACGTGGCATTGCATCTGGAGTAGCCCGTGGCATCAAGTACTTACATTCTCAAGGCCCAAACGTTTCTCATGGAAACATAAAGTCTTCCAACATATTGCTTGCTGATCCATATGATGCCCGAGTCTCAGATTTCGGCCTAGCGCAACTGGTTGGCCCAGCCTCCAGTCCTAACAGAGTGGCGGGGTATCGTGCACCAGATGTGATAGATACTCGGAAAGTATCACAGAAGGCAGATGTTTACAGCTTCGGCGTATTGCTGTTGGAGCTGTTGACAGGAAAAGCTCCAAGTCATGGGGTGTTAAACGAGGAAGGGGTGGATCTACCGAGATGGGTGCAGTCAGTAGTGCAAGAAGAGTGGAAGTTGGAAGTTTTCGATGTTGAACTGCTAAGGTACGAGGGTATTGAGGAGGAGATGGTTCAAATGTTGGAGCTGGCTTTAGATTGTGCTACTCAGCATCCAGATAGACGGCCTTCAATGTTTGAAGTATCGAGTCGCATTGAGGAGATATTATGCCCTTACAATCCAATTCAATAA 1887 44.94 MQPQHVKLYLSLWHLAFLFVIPGVKPDLSSDRASLLALRTAVGGRTAELWNASDESPCSWTGVECDGNRVTVLRLPGVSLSGEIPTGIFGNLNNLHTISLRFNALTGQLPSDLAACTSLRNLYLQGNGFSGHIPEFIFQFHNLVRLNLASNNFSGVLAPGFDRLQRLKTLFLENNRFIGSMPAFKLPVLKQFNVSNNFLNGSVPRRFQSFPSTALLGNQLCGRPLETCSGNIVVPLTVDIGINENRRTKKLSGAVMGGIVIGSVLSFVMFCMIFMLSCRSKSGQIETTLDMTTLDNIRREKVTYENPQSIAATTAMVQNKKEETNENIDVVKKLVFFDNTARVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGHVVAVKRLMDVTISEREFKEKIEAVGAMDHKNLVPLKAYYFSVDEKLLVFDYMAMGSLSALLHGNKRCGRTPLNWEMRRGIASGVARGIKYLHSQGPNVSHGNIKSSNILLADPYDARVSDFGLAQLVGPASSPNRVAGYRAPDVIDTRKVSQKADVYSFGVLLLELLTGKAPSHGVLNEEGVDLPRWVQSVVQEEWKLEVFDVELLRYEGIEEEMVQMLELALDCATQHPDRRPSMFEVSSRIEEILCPYNPIQ* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3287829 3291146 - CsaV3_1G004950.1 Csa01g00495 514992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00495 628 PANTHER INACTIVE RECEPTOR KINASE-RELATED 11 620 - -
Csa01g00495 628 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Csa01g00495 628 SUPERFAMILY L domain-like 51 213 - -
Csa01g00495 628 ProSiteProfiles Protein kinase domain profile. 351 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00495 628 CDD STKc_IRAK 357 620 - -
Csa01g00495 628 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Csa01g00495 628 Gene3D Transferase(Phosphotransferase) domain 1 426 624 - -
Csa01g00495 628 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Csa01g00495 628 Pfam Protein kinase domain 354 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00495 628 Gene3D Ribonuclease Inhibitor 185 229 IPR032675 -
Csa01g00495 628 PANTHER OS05G0588300 PROTEIN 11 620 - -
Csa01g00495 628 SUPERFAMILY Protein kinase-like (PK-like) 355 620 IPR011009 -
Csa01g00495 628 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00495 Csa-Chr1:3287829 Csa03g02101 Csa-Chr3:17491006 0 dispersed
Csa01g00495 Csa-Chr1:3287829 Csa01g00727 Csa-Chr1:4605115 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77747 PF00069 Pkinase 5.10E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00495 - - csv:101215185 1245.72