Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00500 ATGGTTTTGACGACAGTGGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCACCTCCTCCCAAGTTCAAATTGGGGGAGCAATCTATTCCAAAGGATGCAGCGTATCAGATCATACACGATGAATTGATGCTTGATGGAACTCCCAGGCTGAACTTGGCTTCTTTTGTTACTACTTGGATGGAACCAGAGTGTGACAATCTCATCATGGCTTCTATCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACTACCGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCTCCCATCGGAGATCAAGAAGCTGTAGTTGGTGTGGGGACTGTGGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAAAGGAAATGGCAACAAAGAAGAAAATCTCAAGGAAAACCCTGTGATAAACCCAATATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGGTTTTATGTGATGGATCCAGTGAAGGCTGTTGAACTTGTTGATGAGAATACTATTTGTGTTGCGGCAATTTTGGGATCCACTCTGACTGGGGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTTTCTAAGAAGAATGAGGAAACTGGTTGGGATACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCTCCATTCCTTTATCCTGATCTCGACTGGGATTTTAGATTGCCTTTAGTGAAGAGTATAAATGTCAGTGGTCACAAGTATGGGCTTGTGTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAATCAGGATTTGCCTGAGGAGCTTGTTTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAATTTCTCAAAAGGTTCTAGCCAGATCATTGCTCAATATTATCAGTTTATACGGCTTGGATTTGAGGGGTACAAAAACGTGATGGAGAACTGCAGGGAGAATGCAAGAGTGCTGAGAGAGGGAATAGAGAAAATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAGCACACTGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGATGCTCAGCATATTGCAGTGCTGCGAGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATTGACAAAGTCTTGAAGGAAGTCGAGGCCCTGCCAATTCGGGTGTCTTTGGCAGAAGTGAAAGCTGGAGTTGAAGATGGTGGCAGAGTTAGAAAGCATGTGAAGAAGAGTGAACGGGAGATTGGGGAGGAAATAACTACATATTGGAGACGGCTTGTGGATGGGAAGAGAACTGGCGCTTGCTAG 1491 45.67 MVLTTVADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASINKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAVVGVGTVGSSEAIMLAGLAFKRKWQQRRKSQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNEETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSNQDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDIDKVLKEVEALPIRVSLAEVKAGVEDGGRVRKHVKKSEREIGEEITTYWRRLVDGKRTGAC* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3331676 3334752 - CsaV3_1G005000.1 Csa01g00500 514997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00500 496 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa01g00500 496 Gene3D - 65 359 IPR015421 GO:0003824
Csa01g00500 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 IPR010107 GO:0004351|GO:0006536|GO:0030170
Csa01g00500 496 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
Csa01g00500 496 Gene3D - 1 64 - -
Csa01g00500 496 SUPERFAMILY PLP-dependent transferases 14 444 IPR015424 -
Csa01g00500 496 CDD DOPA_deC_like 58 438 - -
Csa01g00500 496 Gene3D - 360 447 - -
Csa01g00500 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00500 Csa-Chr1:3331676 Csa05g01444 Csa-Chr5:15677586 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00500 K01580 - csv:101210903 997.653