Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00502 ATGGACTTTGGCGGTGGCTCCGGTTGGGACAACGATCCCTCCTCCGACCCTCAACGCAGGAAAAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGACTCGAAGCAATGTTCAAAGAATGCCCACACCCAGATGAGAAGCAGAGATTACAGTTAAGTAGAGAACTGGGATTGGCTCCTCGACAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGAGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTTATTTGTCCTTCCTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCATAAACTTCGAATCGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTATATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCTTCTCATTTTTCCTCCTTAGAACTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGTCCTTCTCTTGATCTTGATTTACTTTCTGCAAGTTCTACAAGTGTTCCTAATTTACCATACCATCACCCAATTCACCTATCCACCGTGGATAAGTCTCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGTTGCTTAGGCTTTCCCAAACTAATGAGCCTTTCTGGATGAAATCGCCAACTGATGGTCGTGACCTTCTCGACCTTGAAACCTATGAACATGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTACATTTTCGCACCGAAGCATCAAGAGACTCAGGTGTCGTGATCATAAGTAGTGCAGCATTGGTTGACATTTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCAGTGGCAAGAACACTTGAAGTTGTATCGTCCGGGATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGATGTACCAAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGTCACTTTTACTTCATCCGGTATTGTCAACAAATCGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTACAATATTCCCAGGGAAAACCAAATAGTTTCTCATCCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATCCAGGACATGCCTAATGGTTACTCGAAGGTTACTTGGATTGAGCATGTAGAAGTGGAAGATAGAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGGTTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTAGTAGTTCCAATCAGGATCTTGGCGGAGTAATTCCATCTCTAGAAGGAAAAAGGAGCATGATGAAACTAGCACAACGAATGGTAAACAATTTTTGTGCTAGTATCAGCACATCTCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGCTACAACCATTTGGCTCCCAGTTTCCCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTCTCGGAGGGTAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCCCACCCAGGGAATTGCATATCTGTTCTCAGAGGTTTCAATACAAGTCAGAACAACATGTTGA 1698 45.35 MDFGGGSGWDNDPSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLSASSTSVPNLPYHHPIHLSTVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPTDGRDLLDLETYEHAFPRPNTPLKNLHFRTEASRDSGVVIISSAALVDIFMDSNKWTELFPTIVSVARTLEVVSSGMLGSQNGSLQLMYQELQLLSPLVPTRHFYFIRYCQQIEQGVWAVVDVSYNIPRENQIVSHPQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMVTSSSNQDLGGVIPSLEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNELQPFGSQFPLKPSLTSLRTTEPDPSGMFSRRVIQFKRLLIYPTDPTQGIAYLFSEVSIQVRTTC* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3341774 3345984 - CsaV3_1G005020.1 Csa01g00502 514999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00502 565 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Csa01g00502 565 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289
Csa01g00502 565 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 6 502 - -
Csa01g00502 565 Gene3D - 9 94 - -
Csa01g00502 565 Gene3D - 217 445 IPR023393 -
Csa01g00502 565 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 502 IPR042160 -
Csa01g00502 565 CDD START_ArGLABRA2_like 213 442 - -
Csa01g00502 565 Pfam START domain 219 442 IPR002913 GO:0008289
Csa01g00502 565 SUPERFAMILY Bet v1-like 212 444 - -
Csa01g00502 565 MobiDBLite consensus disorder prediction 1 26 - -
Csa01g00502 565 SMART START_1 218 443 IPR002913 GO:0008289
Csa01g00502 565 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Csa01g00502 565 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Csa01g00502 565 SMART HOX_1 19 82 IPR001356 GO:0003677
Csa01g00502 565 CDD homeodomain 21 79 IPR001356 GO:0003677
Csa01g00502 565 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00502 Csa-Chr1:3341774 Csa03g01781 Csa-Chr3:13390651 0 dispersed
Csa01g00502 Csa-Chr1:3341774 Csa06g00579 Csa-Chr6:4976972 1.17E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30647 PF01852 START 6.80E-48 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00502 K09338 - csv:101215660 1013.83