Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00504 ATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACTGATCCACCAATGTTTGACGAACAAGTGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCGTCACTATCAATTCCAGAAAATTCTTCTGGGATGTATGGTAGCGAAGCAAATCTTGTTGGTCATACTGGTCCCCTACGGATAGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAAAAAACTGGCAGTAAGCCCAAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAGACAGCAGAGCCGCTGGCAGAAAAATTTCCTTCGTTCAAGATTGTAGATGAGTCTGATTGGTCCATTCATAACTATGCCGGTAGGAACGAACACTTAATAAAGTCTGGCCAGCTGGGATTGTGTAATGATCCTTTCTGTATAACTTGCCCAACATATAATTCCAAAGCATCACAACAGAAAAGCTCAAGAATGTCAGGCATATTTGATGCCAAGTTTCATAATGATCTCTATGGAGGAGGGAAAGGATGGGCGAGGAAGTTTCAGTCCTTCTGGTGCTTCTTGCTTTCATATATTCCTGGTGTAATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAATAAGTTTTTTGTCATATCTTGCTTGGTGGCAATCTTCTTGGACCCATTGTTTTTCTTCTTGCTGTCTGTTCAAGAGAATAATAAGTGCATTGTTATTGACTGGCCTTTGACCACAACCTTGGTGGTTTTCCGGAGCATGACTGATTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTATGTAGCACCAGAATCCAGAGTCGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCCATGAATTACCTCAAAGGAAATTTTTTTATAGATTTGCTTGTTGTCTTGCCGCTGCCTCAGATCATAATTTTTTTAATCCTGCCAAAGTCTTTGGGATCATCTGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGTTCAATATATTCCCAGACTGTATAGGTTTCTACCTCTTCTCGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTTTGACCTTTATGTTGGCTGGTCATATTGTTGGGTCTTTCTGGTATCTTCTCGGGCTTCAGAGGGTGACTCGATGTTTTCGAGAAGCTTGCATTAACACTGGAAATAGGAGCTGCTTGGAATATATAGATTGTGGGCATGGGGATGAATCTAGGAGTCAGATTCTGGATCCACATCGGGATTCATGGACGCATAATGTGAATGCTACGGCATGTTTCGGCAGTGAAGGTTTCGATTATGGAATCTACCTTCAAGCTGTAAAACTTACCACAAAAAATAGTATAATCACGAGATATACATACTCATTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCGGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTACGACGTCGTGATGTCGAGCAATGGATGGAGCATCGTCGCTTACCAGAAGGTTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGAGTAAATGAAGAGAGAATTTTTGAAAATTTGCCTGAGGACCTACAAAAAAACATAAGACGGCATCTCTTTAAATTTGTCAACAAGGTTCGCATTTTTGCTCTGATGGACTATGAACCTATTTTAGACGCAATACGTGAGAGACTGCGACAAAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCATTGAGAAGATGGTTTTCATCGTACGGGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGTGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCCTAAACAAAGATATGAAGCGGCAGCAAGTTCCAGCGCCGAGATTAGTAAGCAACCGGACCGTAAGATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGCTGTAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAACCCGCGTGTTCAAGGAGCCATAAGGTACGAATCACCCTACTGGAGGTATTTAGCTGCAATGCGTATTCAAGTAGCATGGAGATACAGGAAAAGGCGTCTATCTCGAGTTCAAACCTCTCAATCTAACTAA 2325 41.85 MAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPENSSGMYGSEANLVGHTGPLRIERSSFMVSGSKKTGSKPKKLSQSKPGVTESKTAEPLAEKFPSFKIVDESDWSIHNYAGRNEHLIKSGQLGLCNDPFCITCPTYNSKASQQKSSRMSGIFDAKFHNDLYGGGKGWARKFQSFWCFLLSYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQENNKCIVIDWPLTTTLVVFRSMTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYLKGNFFIDLLVVLPLPQIIIFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSFWYLLGLQRVTRCFREACINTGNRSCLEYIDCGHGDESRSQILDPHRDSWTHNVNATACFGSEGFDYGIYLQAVKLTTKNSIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPEGLRRQVRQAERYNWASTRGVNEERIFENLPEDLQKNIRRHLFKFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSLNKDMKRQQVPAPRLVSNRTVRCLSNVEAFSLRAVDLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAAMRIQVAWRYRKRRLSRVQTSQSN* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3351942 3372168 - CsaV3_1G005040.1 Csa01g00504 515001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00504 774 Pfam Ion transport protein 208 532 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa01g00504 774 Gene3D Jelly Rolls 602 728 IPR014710 -
Csa01g00504 774 MobiDBLite consensus disorder prediction 71 94 - -
Csa01g00504 774 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g00504 774 CDD CAP_ED 604 722 IPR000595 -
Csa01g00504 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 770 - -
Csa01g00504 774 Gene3D - 209 526 - -
Csa01g00504 774 Gene3D Helix hairpin bin 527 596 - -
Csa01g00504 774 ProSiteProfiles cAMP/cGMP binding motif profile. 617 674 IPR000595 -
Csa01g00504 774 SUPERFAMILY Voltage-gated potassium channels 203 527 - -
Csa01g00504 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 770 - -
Csa01g00504 774 SUPERFAMILY cAMP-binding domain-like 532 730 IPR018490 -
Csa01g00504 774 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00504 Csa-Chr1:3351942 Csa01g01942 Csa-Chr1:16308637 2.73E-144 dispersed
Csa01g00504 Csa-Chr1:3351942 Csa05g00059 Csa-Chr5:292711 1.01E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00504 K05391 - csv:101215903 1519.6