Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00508 ATGGAGGCACTGAGACCGGGCTGGGCAGTGAGGATGATAATCGTTATGGTAATTACGGCAATTTTCTTTCGCTGCGTCAATGCGACCAACCATTCTGTTGGTGGGTCTTCCGGTTGGGATCTCAATTCGAATATCCTGGCTTGGTCTGCGGCCACCACGTTCCAAGTCGGGGACTATCTCGTGTTCAAGTACTTGCCAGTTCACGACGTGCTGGAAGTGAACCGAACAGACTTCTTCAATTGCCGCACCGTGAACCCAATCAGAACTCACAGTGATGGGGAGACGGTGATCCCCCTGAACCAACCTGGCAGTCGCTACTTCATATGTGGCCGCCCTCAACACTGCCTCATGGGACTTAAGCTCCGAGTCCAAGTCCTCCAACGCATGAGCGACCCCAACAACAATTCAACTCACGACAGCCCTAACCATGAGGAGCGACTTAGCCCACGCCACCCTCCTCGTTCTCCTCCCTCCTCACCCCCTTCTCCAACTATTGAAATCCCACCAAGCCCTGACATTCCGGTGGCGCCACTGCCTTGCATTTGTTCCGGGGTGGCCGAGATGATGATGAAAACTTGCCCTATGAACTGGCGTTTCCTGTTGCTCTTCATTATCCTTGCAATCCCTCCTTACTTTCATTCCTTGATTCCATAG 654 52.91 MEALRPGWAVRMIIVMVITAIFFRCVNATNHSVGGSSGWDLNSNILAWSAATTFQVGDYLVFKYLPVHDVLEVNRTDFFNCRTVNPIRTHSDGETVIPLNQPGSRYFICGRPQHCLMGLKLRVQVLQRMSDPNNNSTHDSPNHEERLSPRHPPRSPPSSPPSPTIEIPPSPDIPVAPLPCICSGVAEMMMKTCPMNWRFLLLFIILAIPPYFHSLIP* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3392877 3394527 - CsaV3_1G005080.1 Csa01g00508 515005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00508 217 PANTHER COPPER ION BINDING / ELECTRON CARRIER PROTEIN-RELATED 30 137 - -
Csa01g00508 217 Pfam Plastocyanin-like domain 40 118 IPR003245 GO:0009055
Csa01g00508 217 ProSitePatterns Type-1 copper (blue) proteins signature. 103 117 IPR028871 -
Csa01g00508 217 SUPERFAMILY Cupredoxins 28 126 IPR008972 -
Csa01g00508 217 Gene3D - 27 131 IPR008972 -
Csa01g00508 217 MobiDBLite consensus disorder prediction 152 171 - -
Csa01g00508 217 MobiDBLite consensus disorder prediction 130 171 - -
Csa01g00508 217 ProSiteProfiles Phytocyanin domain profile. 29 127 IPR003245 GO:0009055
Csa01g00508 217 PANTHER BLUE COPPER PROTEIN 30 137 IPR039391 GO:0009055
Csa01g00508 217 CDD Phytocyanin 29 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00508 - - - csv:101216391 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00508 Csa-Chr1:3392877 Csa02g02707 Csa-Chr2:23586549 1.10E-31 dispersed
Csa01g01614 Csa-Chr1:11762019 Csa01g00508 Csa-Chr1:3392877 8.72E-22 dispersed
Csa01g00508 Csa-Chr1:3392877 Csa02g02171 Csa-Chr2:19559517 6.22E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g973 . . . . Bpe12g00630 . . Bma12g01259 . . . . . . . Cpe20g00050 . . . . . . . . . . . . . . . . . . . Lsi02g00032 Csa01g00508 Chy12g01576 Cme12g02034 . . . . Bpe07g01066 . . . . . . Cma13g01102 . Car13g00936 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011830 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00508 Csa_Chr01 FPKM 5.552331 5.323661 1.307026 1.639368 3.349556 3.257219 3.062803 0.0 0.0 0.0