Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00509 ATGGCTCAGGCGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGTGATCTGGATTTTCTTCTACCGCCCAAGAAAATTATCGGTCCAGACGAGAACGGTGTGAAGAAAGTTATTGAATATCAGTTCAATGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTACTCGCAAGCTCGCCAATGCTCGCCTCAGTAAACACGCCGTCGAGCGTCGATCTTGGGCAAAGTTCGGGGACGCTGTGCATGAGGATGTCGGCAGCCGTCTCACTATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTACTTATGGTGTGTCGTACTTGTGGCAAAAAGGGTGATCACTGGACCTCAAGGTGCCCTTACAAAGACTTGGCACCCCAAGGTGAGGGATTGGATAAGGCTACTGCACCAGAGGCTGCAGCTGCTGCACCTGGTGGTGCAACTAAGGGAACTTATGTTCCTCCAGGCATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGCAGGAACGACGAAAACTCTGTTCGTGTCACCAATCTCTCGGAGGACACGAGAGAGCCTGATCTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGACCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCTATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA 870 50.69 MAQAASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGVKKVIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKATAPEAAAAAPGGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3395426 3397463 - CsaV3_1G005090.1 Csa01g00509 515006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00509 289 MobiDBLite consensus disorder prediction 168 206 - -
Csa01g00509 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Csa01g00509 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Csa01g00509 289 Gene3D - 180 289 IPR012677 -
Csa01g00509 289 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Csa01g00509 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Csa01g00509 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Csa01g00509 289 SUPERFAMILY RNA-binding domain, RBD 206 287 IPR035979 GO:0003676
Csa01g00509 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Csa01g00509 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Csa01g00509 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Csa01g00509 289 CDD eIF3G 37 156 IPR024675 -
Csa01g00509 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00509 Csa-Chr1:3395426 Csa03g02049 Csa-Chr3:16611926 0 dispersed
Csa01g00509 Csa-Chr1:3395426 Csa07g02337 Csa-Chr7:21640453 2.70E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00509 K03248 - csv:101212619 556.599