Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00509 | ATGGCTCAGGCGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGTGATCTGGATTTTCTTCTACCGCCCAAGAAAATTATCGGTCCAGACGAGAACGGTGTGAAGAAAGTTATTGAATATCAGTTCAATGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTACTCGCAAGCTCGCCAATGCTCGCCTCAGTAAACACGCCGTCGAGCGTCGATCTTGGGCAAAGTTCGGGGACGCTGTGCATGAGGATGTCGGCAGCCGTCTCACTATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTACTTATGGTGTGTCGTACTTGTGGCAAAAAGGGTGATCACTGGACCTCAAGGTGCCCTTACAAAGACTTGGCACCCCAAGGTGAGGGATTGGATAAGGCTACTGCACCAGAGGCTGCAGCTGCTGCACCTGGTGGTGCAACTAAGGGAACTTATGTTCCTCCAGGCATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGCAGGAACGACGAAAACTCTGTTCGTGTCACCAATCTCTCGGAGGACACGAGAGAGCCTGATCTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGACCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCTATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA | 870 | 50.69 | MAQAASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGVKKVIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKATAPEAAAAAPGGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT* | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3395426 | 3397463 | - | CsaV3_1G005090.1 | Csa01g00509 | 515006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00509 | 289 | MobiDBLite | consensus disorder prediction | 168 | 206 | - | - | |
Csa01g00509 | 289 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 7 | 288 | - | - | |
Csa01g00509 | 289 | SMART | rrm1_1 | 209 | 282 | IPR000504 | GO:0003723 | |
Csa01g00509 | 289 | Gene3D | - | 180 | 289 | IPR012677 | - | |
Csa01g00509 | 289 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 32 | 157 | IPR024675 | - | |
Csa01g00509 | 289 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 286 | IPR000504 | GO:0003723 | |
Csa01g00509 | 289 | CDD | RRM_eIF3G_like | 209 | 284 | IPR034240 | - | |
Csa01g00509 | 289 | SUPERFAMILY | RNA-binding domain, RBD | 206 | 287 | IPR035979 | GO:0003676 | |
Csa01g00509 | 289 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 9 | 288 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Csa01g00509 | 289 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 276 | IPR000504 | GO:0003723 | |
Csa01g00509 | 289 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 7 | 288 | - | - | |
Csa01g00509 | 289 | CDD | eIF3G | 37 | 156 | IPR024675 | - | |
Csa01g00509 | 289 | PIRSF | Transl_init_eIF-3_RNA-bind | 1 | 289 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00509 | Csa-Chr1:3395426 | Csa03g02049 | Csa-Chr3:16611926 | 0 | dispersed | |
Csa01g00509 | Csa-Chr1:3395426 | Csa07g02337 | Csa-Chr7:21640453 | 2.70E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00509 | K03248 | - | csv:101212619 | 556.599 |